SRR2934278.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934278.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1386414
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGCT	8016	0.5781822745586817	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5734	0.4135849753392565	No Hit
CCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	5535	0.3992313984134609	No Hit
TCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	5250	0.3786747681428491	No Hit
GCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	3530	0.2546137012465252	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCC	2810	0.20268116161550592	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTG	2464	0.17772469118171053	No Hit
CTGTCACTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGCT	2450	0.17671489179999625	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2188	0.15781721765648643	No Hit
TCTGTATCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	1965	0.1417325560763235	No Hit
TCCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTG	1782	0.1285330355867728	No Hit
CCTGTATCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	1579	0.11389094455191595	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTC	1552	0.11194347431575273	No Hit
GCTGTATCTTATACACATCTGACGCAGTACGAGTCGTATGCCGTCTTCTGC	1523	0.1098517470250589	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGACGA	20	7.03379E-4	45.000004	5
TACGCTA	20	7.03379E-4	45.000004	31
CCGCGTA	20	7.03379E-4	45.000004	14
CGATCGC	20	7.03379E-4	45.000004	10
TCGTTAG	200	0.0	43.875	1
CGTTTAT	1350	0.0	43.333332	1
CGTTAGG	340	0.0	43.014706	2
CGTTTTT	3300	0.0	42.954548	1
CGTAGGG	630	0.0	41.428574	3
AGGGCGA	820	0.0	41.158535	6
TTTAGGG	5060	0.0	41.08696	3
TTAGGGA	2265	0.0	40.92715	4
CGCGTAG	55	6.184564E-11	40.909092	13
CTTAGGG	2410	0.0	40.33195	3
TTTTAGG	2810	0.0	40.035587	2
TTAGGGG	4525	0.0	39.679554	4
TGTAGGG	1805	0.0	39.515236	3
TCTTAGG	1545	0.0	39.466022	2
CTAGGGG	2000	0.0	39.375	4
TAGGGAA	1395	0.0	39.354836	5