SRR2934270.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934270.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1367080
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3989	0.291789800158001	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGCT	3350	0.2450478391900986	No Hit
CCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	3175	0.2322468326652427	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	2492	0.182286332913948	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	2420	0.1770196330865787	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1583	0.11579424759341078	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1400	0.10240805219884716	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACATA	20	7.0337567E-4	45.0	13
ACGTATG	20	7.0337567E-4	45.0	32
TAGTCGG	20	7.0337567E-4	45.0	1
TACGTAG	20	7.0337567E-4	45.0	1
CGTTAGG	320	0.0	43.59375	2
CGTTTAT	830	0.0	42.831326	1
TAGGGCG	525	0.0	41.999996	5
TTTAGGG	4935	0.0	41.48936	3
TTAGGGA	2430	0.0	41.018517	4
CGTTTTT	1990	0.0	40.929646	1
TTCGTAG	305	0.0	40.573772	1
CTTAGGG	2680	0.0	40.298504	3
GTTAGGG	1705	0.0	40.249268	3
AGGGCGA	780	0.0	39.807693	6
TTAGGGG	4935	0.0	39.756836	4
TTAGGGT	985	0.0	39.746193	4
TAGGGCA	985	0.0	39.746193	5
TCTTAGG	1625	0.0	39.73846	2
TAGGGAA	1110	0.0	39.72973	5
TAGGGAG	1500	0.0	39.600002	5