SRR2934267.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934267.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	946220
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4383	0.4632115152924267	No Hit
CTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT	3883	0.4103696814694257	No Hit
TCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	3156	0.33353765509078226	No Hit
CCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	3140	0.33184671640844626	No Hit
GCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	2738	0.28936188201475344	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCG	1729	0.18272706135993744	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGC	1723	0.18209295935406142	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1586	0.16761429688655916	No Hit
CGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTG	1434	0.15155037940436686	No Hit
TCCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTG	1384	0.14626619602206675	No Hit
CTGTCACTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT	1347	0.14235590031916467	No Hit
GCTGTATCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	1321	0.13960812496036862	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTC	1266	0.1337955232398385	No Hit
TCTGTATCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	1173	0.12396694214876033	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCC	1038	0.10969964701655005	No Hit
TTCCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCT	977	0.10325294329014395	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGTAT	35	1.2116288E-7	45.0	14
CACGCGC	20	7.032655E-4	45.0	10
ATTCGGT	20	7.032655E-4	45.0	12
GGCCCGT	55	1.8189894E-12	45.0	8
GTAGCCG	25	3.8902814E-5	45.0	43
TACGCGG	20	7.032655E-4	45.0	2
TGCGCAG	35	1.2116288E-7	45.0	1
CCGAGCC	25	3.8902814E-5	45.0	43
TCGTCAA	20	7.032655E-4	45.0	14
CGTAAGG	45	3.8380676E-10	45.0	2
TTACGCG	20	7.032655E-4	45.0	1
GTCCCGA	25	3.8902814E-5	45.0	32
GGCGCTA	20	7.032655E-4	45.0	7
CGCGTTG	20	7.032655E-4	45.0	11
GCGCTAA	20	7.032655E-4	45.0	8
CGTTTAG	20	7.032655E-4	45.0	41
CGTTTAT	1200	0.0	44.625	1
CGTTTTT	2385	0.0	44.15094	1
TCGCAGG	115	0.0	43.04348	2
CGTAGGG	395	0.0	42.72152	3