SRR2934266.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934266.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	543662
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2162	0.3976735545246863	No Hit
CTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	1810	0.33292744388976975	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1662	0.3057046473728162	No Hit
TCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	1477	0.2716761517266243	No Hit
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	1464	0.2692849601406756	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	659	0.1212150196261648	No Hit
CCTGTATCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	601	0.11054662639654786	No Hit
TCCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	557	0.10245336256718329	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAT	20	7.030002E-4	45.000004	18
GCGGTAT	20	7.030002E-4	45.000004	22
CGTTCCA	20	7.030002E-4	45.000004	18
TTATCCG	20	7.030002E-4	45.000004	1
CACTCGA	20	7.030002E-4	45.000004	45
CAAGCGT	20	7.030002E-4	45.000004	17
ACCCGTA	20	7.030002E-4	45.000004	41
TATACGG	20	7.030002E-4	45.000004	2
ACGAGTT	20	7.030002E-4	45.000004	31
CCACGTT	20	7.030002E-4	45.000004	13
ATACCCG	20	7.030002E-4	45.000004	39
TAACGAT	25	3.8880848E-5	45.0	14
CGTTACT	25	3.8880848E-5	45.0	42
CTAACGA	25	3.8880848E-5	45.0	13
TACTCGA	25	3.8880848E-5	45.0	45
TTAGGGA	1135	0.0	42.819386	4
GTTTAGG	365	0.0	42.53425	2
TTTAGGG	1845	0.0	42.439026	3
TAGGGGT	350	0.0	42.42857	5
AGGGCGC	75	0.0	42.000004	6