SRR2934256.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934256.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	957562
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4784	0.4996021145367089	No Hit
CTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGCT	2800	0.29240926436095	TruSeq Adapter, Index 27 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC	2347	0.24510162266255348	TruSeq Adapter, Index 20 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC	2143	0.22379751911625564	TruSeq Adapter, Index 20 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC	1847	0.1928856825980981	TruSeq Adapter, Index 20 (95% over 21bp)
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1731	0.18077158450314446	No Hit
CGCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTG	1195	0.1247960967540483	TruSeq Adapter, Index 27 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	25	3.8903156E-5	45.000004	1
CGAACCT	25	3.8903156E-5	45.000004	13
CGCTAGG	130	0.0	45.000004	2
TACGAAC	30	2.1651213E-6	45.000004	11
TCGTCAG	30	2.1651213E-6	45.000004	1
GTCGTAG	30	2.1651213E-6	45.000004	1
CGTAAGA	25	3.8903156E-5	45.000004	18
AGGATCG	25	3.8903156E-5	45.000004	41
CGTCCGG	60	0.0	45.000004	2
TCGCGCA	25	3.8903156E-5	45.000004	34
TGCGTCG	25	3.8903156E-5	45.000004	1
TGTCACG	20	7.0326973E-4	45.0	1
CTATCGG	20	7.0326973E-4	45.0	2
TTCCGCG	40	6.8121153E-9	45.0	1
TCGTCCG	20	7.0326973E-4	45.0	1
CGAATAT	70	0.0	45.0	14
GCGATCC	20	7.0326973E-4	45.0	9
TAGGCGA	40	6.8121153E-9	45.0	5
CGTCAGG	75	0.0	45.0	2
CGTTTTT	3050	0.0	44.040985	1