SRR2934252.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934252.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	985893
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT	3659	0.37113561005098933	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	3487	0.3536894977446843	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGC	3213	0.3258974351171983	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCG	3014	0.3057126889023454	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	2788	0.28278930877894454	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	2525	0.2561129858919781	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTC	2303	0.23359532931058444	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2137	0.21675780231729	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG	1241	0.12587572890770093	No Hit
CTGTCACTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT	1127	0.11431260796049875	Illumina Single End Adapter 1 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTG	1074	0.10893677102890476	No Hit
CCTGTATCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGC	1063	0.10782103128838526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACTTA	35	1.2117016E-7	45.000004	21
ACAGTCG	25	3.890401E-5	45.0	32
TCCGAAC	20	7.0327986E-4	45.0	20
CCGTGCG	25	3.890401E-5	45.0	1
CCGTAGG	55	1.8189894E-12	45.0	2
GTCCGCG	25	3.890401E-5	45.0	1
ATCGGGC	25	3.890401E-5	45.0	4
GTACGTT	20	7.0327986E-4	45.0	10
TACGTAG	25	3.890401E-5	45.0	1
TGCCGAT	20	7.0327986E-4	45.0	33
ACGATAG	30	2.1651867E-6	44.999996	26
CGGGCTA	65	0.0	44.999996	6
TAGGGCG	415	0.0	42.831326	5
GTTTGCG	185	0.0	42.567566	1
CATACGA	170	0.0	42.35294	18
CGTTTAT	490	0.0	42.2449	1
TTAGGGA	2130	0.0	42.04225	4
AATCGTT	75	0.0	42.0	22
CGTTTTT	1265	0.0	41.79842	1
TTGTGCG	140	0.0	41.785717	1