SRR2934247.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934247.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1483523
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC	12518	0.8438022194465471	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG	11545	0.7782151001366342	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	8362	0.5636582648196219	No Hit
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	3030	0.20424354728575156	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2765	0.18638066278716273	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCT	2749	0.18530214900611583	No Hit
GAATCAGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	2681	0.18071846543666664	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTC	2619	0.17653922453511	No Hit
CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT	2232	0.15045267245603877	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAAGCAGT	2126	0.14330751865660324	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTA	2020	0.1361623648571677	No Hit
CCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	1961	0.13218534528955736	No Hit
GAACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCT	1608	0.10839063499521072	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGAC	20	7.0339505E-4	45.0	10
TCGTTAG	180	0.0	43.750004	1
CGTTTAT	610	0.0	42.418034	1
TTAGGGA	3730	0.0	41.621983	4
CGTAAGG	65	0.0	41.53846	2
TAGGGAC	1680	0.0	41.11607	5
ACACGAC	540	0.0	40.833332	26
CGATTAG	50	1.0822987E-9	40.5	10
ATAGTCG	50	1.0822987E-9	40.5	16
CACGACC	545	0.0	40.458714	27
TCTAGGG	2635	0.0	40.388996	3
CTAGGGA	2010	0.0	40.298508	4
TTTAGGG	5910	0.0	40.126904	3
CGTTAGG	490	0.0	39.94898	2
GTTAGGG	2220	0.0	39.93243	3
TTTCGCG	305	0.0	39.836067	1
CTTAGGG	2590	0.0	39.700775	3
TACGGCT	1545	0.0	39.611652	7
TATTGCG	40	3.4591358E-7	39.375	1
CGACCAA	555	0.0	39.324326	29