##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934247.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1483523 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42108885403192 33.0 31.0 34.0 31.0 34.0 2 32.58356762921775 34.0 31.0 34.0 31.0 34.0 3 32.64600076978921 34.0 31.0 34.0 31.0 34.0 4 36.09701029239183 37.0 35.0 37.0 35.0 37.0 5 35.163713673465125 37.0 35.0 37.0 35.0 37.0 6 25.776440270895698 37.0 0.0 37.0 0.0 37.0 7 30.927090446187893 37.0 19.0 37.0 17.0 37.0 8 34.649933300663356 37.0 32.0 37.0 32.0 37.0 9 37.25422659439725 39.0 37.0 39.0 35.0 39.0 10 37.4013796887544 39.0 37.0 39.0 35.0 39.0 11 37.45632861775652 39.0 37.0 39.0 35.0 39.0 12 37.17739866520438 39.0 37.0 39.0 34.0 39.0 13 37.15920481178924 39.0 37.0 39.0 34.0 39.0 14 38.190603044239964 40.0 38.0 41.0 33.0 41.0 15 38.33728968138681 40.0 38.0 41.0 33.0 41.0 16 38.52337779731086 40.0 38.0 41.0 34.0 41.0 17 38.486470381652325 40.0 38.0 41.0 34.0 41.0 18 38.48832003278682 40.0 38.0 41.0 34.0 41.0 19 38.49686051379049 40.0 38.0 41.0 34.0 41.0 20 38.37283008082787 40.0 37.0 41.0 34.0 41.0 21 38.33878746740024 40.0 37.0 41.0 34.0 41.0 22 38.3789297503308 40.0 37.0 41.0 34.0 41.0 23 38.328166802941375 40.0 37.0 41.0 34.0 41.0 24 38.28720956803501 40.0 37.0 41.0 34.0 41.0 25 38.1933006768348 40.0 37.0 41.0 34.0 41.0 26 38.12602433531533 40.0 37.0 41.0 34.0 41.0 27 38.086384235364065 40.0 37.0 41.0 34.0 41.0 28 38.01723936871892 40.0 36.0 41.0 34.0 41.0 29 37.981101068200495 40.0 36.0 41.0 34.0 41.0 30 37.77301194521419 40.0 36.0 41.0 33.0 41.0 31 37.75427142012628 40.0 36.0 41.0 33.0 41.0 32 37.675342411273704 40.0 36.0 41.0 33.0 41.0 33 37.6274348291196 40.0 36.0 41.0 33.0 41.0 34 37.49302167880107 40.0 36.0 41.0 33.0 41.0 35 37.47894100731839 40.0 36.0 41.0 33.0 41.0 36 37.40443457903922 40.0 36.0 41.0 33.0 41.0 37 37.32615335252638 40.0 35.0 41.0 32.0 41.0 38 37.204569123633405 40.0 35.0 41.0 32.0 41.0 39 37.196388596604166 40.0 35.0 41.0 32.0 41.0 40 37.10734245441426 40.0 35.0 41.0 32.0 41.0 41 37.005454583447644 40.0 35.0 41.0 32.0 41.0 42 36.99327411843294 39.0 35.0 41.0 31.0 41.0 43 36.95199130717892 39.0 35.0 41.0 32.0 41.0 44 36.85566856732252 39.0 35.0 41.0 31.0 41.0 45 36.83376799685613 39.0 35.0 41.0 31.0 41.0 46 36.83224864056708 39.0 35.0 41.0 31.0 41.0 47 36.698825700713776 39.0 35.0 41.0 31.0 41.0 48 36.676462043392654 39.0 35.0 41.0 31.0 41.0 49 36.67620050380075 39.0 35.0 41.0 31.0 41.0 50 36.579588587436795 39.0 35.0 41.0 31.0 41.0 51 35.63009201744766 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 10.0 10 16.0 11 12.0 12 9.0 13 17.0 14 12.0 15 29.0 16 75.0 17 134.0 18 309.0 19 566.0 20 1128.0 21 1956.0 22 2838.0 23 3943.0 24 5340.0 25 7371.0 26 9253.0 27 11065.0 28 12819.0 29 15414.0 30 20115.0 31 27907.0 32 39344.0 33 64527.0 34 92667.0 35 109175.0 36 129406.0 37 221542.0 38 326238.0 39 379975.0 40 310.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.069938922416437 4.081163554592682 52.43828373405738 15.410613788933505 2 19.426190224216274 8.103817736563572 51.92275414671697 20.547237892503183 3 20.648213745253695 8.511630760021921 49.75521107525802 21.084944419466364 4 18.203560039177013 4.190834924702886 53.79822220484617 23.807382831273934 5 20.853805434765757 7.608914725285689 47.95732860225288 23.579951237695674 6 15.803395026568513 33.66540323271025 37.912523095361514 12.61867864535973 7 83.75421210186832 1.831586028662852 10.736200247653727 3.678001621815098 8 85.31044008080765 4.69665788801387 6.585809589740098 3.407092441438387 9 80.51294115426589 4.437207916560782 7.609453982176212 7.440396946997114 10 41.357970183138384 28.82307857714373 15.934771486522283 13.884179753195603 11 30.410853084178672 24.005020481650774 27.35252503668632 18.231601397484233 12 27.018455393007052 22.093894061635712 30.234246452532247 20.653404092824985 13 25.820159175152664 22.343300373502803 32.9990165302459 18.83752392109863 14 20.935233225234796 25.963601508031893 32.445401925012284 20.655763341721027 15 18.82956988196341 24.442560041199226 36.65113382131588 20.076736255521485 16 24.299724372321833 25.20736112618409 29.127152056287635 21.365762445206443 17 24.50484421205468 24.683877499708466 29.940149225863028 20.87112906237382 18 24.12837549535801 23.38163951620568 31.109190757406523 21.380794231029785 19 24.102828200169462 25.7788386159163 28.87956573642606 21.238767447488176 20 24.18809819598348 28.638720127696033 29.78174251427177 17.39143916204872 21 24.42537122781379 27.472509694827785 30.396225741023226 17.705893336335198 22 22.74187862271094 22.184017369464442 32.66063283144245 22.413471176382167 23 21.35976321229937 26.35968569412136 31.80644991685333 20.47410117672594 24 21.65049008340282 26.759679492667114 29.524112534824198 22.065717889105866 25 22.410707484818236 29.154586750593015 26.574377343661006 21.86032842092775 26 21.034928342870316 26.556312237828468 28.391740471836297 24.01701894746492 27 21.356797299401492 26.666792493274453 30.03357548214621 21.942834725177836 28 17.95745667576438 28.24155742782552 30.43437816602776 23.36660773038234 29 21.72099792183876 27.84068733683266 28.362890228193294 22.075424513135285 30 24.366390005412793 26.07192473591579 29.013031816830615 20.54865344184081 31 23.56626759409864 27.40779886796497 27.322191836594378 21.703741701342008 32 24.98538950862238 28.865140614604563 26.028312334894704 20.121157541878354 33 25.329233183442383 25.2222580977848 26.02231310198763 23.42619561678518 34 21.463233128168554 27.535602751019027 28.89075531690442 22.110408803907994 35 21.610248037947507 29.679216297961002 26.712224886301055 21.998310777790437 36 24.075797948531974 29.97230241796049 25.45481263182303 20.497087001684502 37 22.27151179995187 29.5695449278508 26.98347110223434 21.175472169962987 38 22.713028379067936 29.454548395946677 26.11776157161028 21.71466165337511 39 22.58286524711784 26.659445118141072 26.893347794405614 23.86434184033547 40 24.171785675045147 26.04550114828014 27.5298057394459 22.252907437228814 41 21.77964210868318 26.719572261434436 26.103606078234044 25.397179551648343 42 21.56097343957593 26.880473036144366 29.27187512428186 22.286678399997843 43 23.37294399884599 25.506109443534076 28.117528343005134 23.003418214614804 44 22.85128036437588 25.568730649946108 27.926901032205098 23.653087953472916 45 21.171764778840636 24.893715837233398 27.017174657892056 26.91734472603391 46 23.108101458487667 26.291065254802255 27.378881217210655 23.221952069499427 47 19.718804494436554 26.612934211333428 31.713023660570144 21.955237633659877 48 21.046252737571308 28.90450636761277 27.7049968217547 22.34424407306122 49 22.920979317476036 25.88668999402099 29.550064272680636 21.642266415822338 50 21.885201645003143 25.712981868161126 27.5651944728865 24.836622013949228 51 20.839245498721624 25.78753413327599 26.168856161987375 27.204364206015008 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 172.0 1 819.5 2 1467.0 3 4300.5 4 7134.0 5 4813.5 6 2493.0 7 2456.0 8 2419.0 9 2429.0 10 2439.0 11 2466.5 12 2494.0 13 2561.5 14 2629.0 15 2651.5 16 2674.0 17 2768.0 18 2862.0 19 3246.5 20 3631.0 21 4232.5 22 4834.0 23 5955.0 24 7076.0 25 8303.0 26 12446.5 27 15363.0 28 18534.0 29 21705.0 30 24020.5 31 26336.0 32 31911.5 33 37487.0 34 41439.5 35 45392.0 36 50770.0 37 56148.0 38 60363.5 39 64579.0 40 71702.5 41 78826.0 42 84055.5 43 89285.0 44 96349.0 45 103413.0 46 134146.5 47 164880.0 48 155482.5 49 146085.0 50 139457.5 51 132830.0 52 120008.0 53 107186.0 54 98435.5 55 89685.0 56 80413.0 57 71141.0 58 63894.5 59 56648.0 60 49160.5 61 41673.0 62 35262.5 63 28852.0 64 24092.5 65 19333.0 66 15739.0 67 12145.0 68 10413.5 69 8682.0 70 7098.5 71 5515.0 72 4613.0 73 3711.0 74 3069.0 75 1888.0 76 1349.0 77 991.0 78 633.0 79 415.5 80 198.0 81 132.5 82 67.0 83 62.5 84 58.0 85 44.0 86 30.0 87 17.0 88 4.0 89 3.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1483523.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.569654718717054 #Duplication Level Percentage of deduplicated Percentage of total 1 71.69225561366322 21.19915244502026 2 9.827264225336863 5.811776199456229 3 3.57976397760317 3.1755715437668073 4 1.9651089129709154 2.3243036816489346 5 1.285851605954218 1.901109400378702 6 1.0841316433583712 1.9234439018245402 7 0.9361979856402456 1.937813582861834 8 0.76215494776716 1.8029326918109403 9 0.6979232708891986 1.8573615126316108 >10 7.983782666040852 48.46742784477954 >50 0.13803106903618667 2.6515219629708007 >100 0.04050097822616755 2.023083299705525 >500 0.002910249729718738 0.5531190244698034 >1k 0.003395291351338527 2.0461029438833696 >5k 2.425208108098948E-4 0.5996604800488132 >10k+ 4.850416216197896E-4 1.7256194847422377 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC 12518 0.8438022194465471 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG 11545 0.7782151001366342 No Hit GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC 8362 0.5636582648196219 No Hit GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC 3030 0.20424354728575156 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2765 0.18638066278716273 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCT 2749 0.18530214900611583 No Hit GAATCAGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC 2681 0.18071846543666664 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTC 2619 0.17653922453511 No Hit CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT 2232 0.15045267245603877 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAAGCAGT 2126 0.14330751865660324 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTA 2020 0.1361623648571677 No Hit CCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC 1961 0.13218534528955736 No Hit GAACTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCT 1608 0.10839063499521072 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16042892493072233 0.0 2 0.0 0.0 0.0 0.6258750285637634 0.0 3 0.0 0.0 0.0 0.8567443848191096 0.0 4 0.0 0.0 0.0 1.218046501469812 0.0 5 0.0 0.0 0.0 2.2385901667854156 0.0 6 0.0 0.0 0.0 2.6164744328197136 0.0 7 0.0 0.0 0.0 3.240933912045853 0.0 8 0.0 0.0 0.0 4.1021945733230964 0.0 9 0.0 0.0 0.0 4.447386390369411 0.0 10 0.0 0.0 0.0 5.928320625969398 0.0 11 0.0 0.0 0.0 7.117449476684891 0.0 12 0.0 0.0 0.0 9.069154977711838 0.0 13 0.0 0.0 0.0 9.472653946046 0.0 14 0.0 0.0 0.0 9.652563526146881 0.0 15 0.0 0.0 0.0 9.986296134269573 0.0 16 0.0 0.0 0.0 10.449922245897097 0.0 17 0.0 0.0 0.0 11.04762110193101 0.0 18 0.0 0.0 0.0 11.65071252687016 0.0 19 0.0 0.0 0.0 12.29182156259121 0.0 20 0.0 0.0 0.0 12.812204461946326 0.0 21 0.0 0.0 0.0 13.518968024088606 0.0 22 0.0 0.0 0.0 14.342211074583947 0.0 23 0.0 0.0 0.0 15.081667085714209 0.0 24 0.0 0.0 0.0 15.637169090064663 0.0 25 0.0 0.0 0.0 16.136858006245944 0.0 26 0.0 0.0 0.0 16.577228664469644 0.0 27 0.0 0.0 0.0 17.098757484717122 0.0 28 0.0 0.0 0.0 17.568180607917775 0.0 29 6.740711131542956E-5 0.0 0.0 18.133928493188176 0.0 30 6.740711131542956E-5 0.0 0.0 18.82896321796157 0.0 31 6.740711131542956E-5 0.0 0.0 19.351233516433517 0.0 32 6.740711131542956E-5 0.0 0.0 19.84276617214563 0.0 33 6.740711131542956E-5 0.0 0.0 20.352700969246854 0.0 34 6.740711131542956E-5 0.0 0.0 20.906382981591793 0.0 35 6.740711131542956E-5 0.0 0.0 21.501924810063613 0.0 36 6.740711131542956E-5 0.0 0.0 22.022779559197936 0.0 37 6.740711131542956E-5 0.0 0.0 22.54855502745829 0.0 38 6.740711131542956E-5 0.0 0.0 23.184878158275943 0.0 39 6.740711131542956E-5 0.0 0.0 24.325945738623535 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCGAC 20 7.0339505E-4 45.0 10 TCGTTAG 180 0.0 43.750004 1 CGTTTAT 610 0.0 42.418034 1 TTAGGGA 3730 0.0 41.621983 4 CGTAAGG 65 0.0 41.53846 2 TAGGGAC 1680 0.0 41.11607 5 ACACGAC 540 0.0 40.833332 26 CGATTAG 50 1.0822987E-9 40.5 10 ATAGTCG 50 1.0822987E-9 40.5 16 CACGACC 545 0.0 40.458714 27 TCTAGGG 2635 0.0 40.388996 3 CTAGGGA 2010 0.0 40.298508 4 TTTAGGG 5910 0.0 40.126904 3 CGTTAGG 490 0.0 39.94898 2 GTTAGGG 2220 0.0 39.93243 3 TTTCGCG 305 0.0 39.836067 1 CTTAGGG 2590 0.0 39.700775 3 TACGGCT 1545 0.0 39.611652 7 TATTGCG 40 3.4591358E-7 39.375 1 CGACCAA 555 0.0 39.324326 29 >>END_MODULE