SRR2934246.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934246.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1289190
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT	3063	0.23759104554022292	No Hit
CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	2687	0.20842544543473035	No Hit
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	2269	0.17600198574298592	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2215	0.1718133091320907	No Hit
TCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	1830	0.14194959625811557	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC	1823	0.14140661966040693	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG	1495	0.11596428765348786	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1492	0.11573158339732702	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1310	0.10161419185690239	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCAC	25	3.8910715E-5	45.0	15
ACGGATA	25	3.8910715E-5	45.0	24
TCGTTAG	230	0.0	42.065216	1
TTAGGGA	2345	0.0	41.449894	4
CTTAGGG	2285	0.0	40.9628	3
CGTTTAT	500	0.0	40.949997	1
TTTAGGG	4330	0.0	40.635105	3
GTTAGGG	1825	0.0	40.56164	3
TTCAGGG	1825	0.0	40.315067	3
TGTAGGG	1795	0.0	40.236767	3
TTAGGGG	4430	0.0	40.073364	4
TAGGGAT	1315	0.0	39.86692	5
ACACGCG	345	0.0	39.782608	36
CGTTAGG	415	0.0	39.578316	2
TTTTAGG	2440	0.0	39.559425	2
TAGGGAG	1350	0.0	39.5	5
TAGGGCG	525	0.0	39.428574	5
TAGGGTA	400	0.0	39.375	5
TTCGGGA	615	0.0	39.14634	4
TAGGGAA	1060	0.0	39.056602	5