SRR2934241.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934241.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1846614
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGCT	4161	0.225331336164461	TruSeq Adapter, Index 16 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGC	3996	0.21639606328122718	No Hit
CCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	3888	0.21054752103038318	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3688	0.19971688723252395	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTC	3177	0.17204461787899367	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCG	3146	0.17036586964032546	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	3098	0.16776651752883928	TruSeq Adapter, Index 13 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	2868	0.15531128866130117	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGTAG	35	1.2124656E-7	45.000004	1
CGAACGT	20	7.034401E-4	45.0	37
GCGAAAT	20	7.034401E-4	45.0	9
ACGTCTA	20	7.034401E-4	45.0	44
TCGAGTA	20	7.034401E-4	45.0	11
CCGAACG	20	7.034401E-4	45.0	36
CGATAGG	50	2.1827873E-11	45.0	2
CGTTTAT	840	0.0	43.392857	1
TTAGGGA	5860	0.0	42.235493	4
TAGGGAT	4010	0.0	42.194515	5
CGTTAGG	540	0.0	42.083332	2
TAGGGGT	2365	0.0	41.575054	5
TAGGGAC	2420	0.0	41.559917	5
TTTAGGG	7970	0.0	41.160603	3
TAGGGCG	690	0.0	41.086956	5
TATCGCG	55	6.184564E-11	40.909092	1
AGGGCGA	1025	0.0	40.82927	6
CTAGGGA	2735	0.0	40.72212	4
TCGTTAG	360	0.0	40.625	1
GCGCGAC	100	0.0	40.5	9