SRR2934240.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934240.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1303519
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6973	0.5349365832028532	No Hit
CTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGCT	5013	0.3845743713747172	No Hit
CCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	3935	0.3018751548692424	No Hit
TCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	3812	0.2924391589228849	No Hit
GCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	3202	0.24564275626208745	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2603	0.19969022315746834	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC	2345	0.179897646294377	No Hit
CGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTG	1942	0.14898133437257147	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCG	1918	0.1471401644318188	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC	1833	0.14061935422498636	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCC	1663	0.1275777338113215	No Hit
TCCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTG	1437	0.11024005020256705	No Hit
CTGTCACTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGCT	1415	0.10855231109021042	No Hit
TCTGTATCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	1392	0.10678785656365578	No Hit
TTCCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCT	1330	0.102031500883378	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGT	20	7.0336345E-4	45.000004	40
CGCATCG	20	7.0336345E-4	45.000004	21
ACCTACG	20	7.0336345E-4	45.000004	19
CGCTCCG	20	7.0336345E-4	45.000004	12
TACGAAG	20	7.0336345E-4	45.000004	25
CCGACAA	20	7.0336345E-4	45.000004	16
CCGGTTG	20	7.0336345E-4	45.000004	1
TCGACGG	20	7.0336345E-4	45.000004	2
CCGCATC	20	7.0336345E-4	45.000004	20
CGACGTA	25	3.891094E-5	45.0	28
CAACGGT	35	1.2121018E-7	45.0	21
GCACCGT	25	3.891094E-5	45.0	9
ATCGTAG	25	3.891094E-5	45.0	1
GACGGTT	50	2.1827873E-11	45.0	9
CGAATAA	25	3.891094E-5	45.0	13
TTCGCAG	100	0.0	45.0	1
GCCGTTG	50	2.1827873E-11	45.0	1
AGTGCGA	30	2.165727E-6	44.999996	25
CGTTTAT	1645	0.0	44.179333	1
CGTTTTT	4020	0.0	43.768658	1