SRR2934239.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934239.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	365176
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGC	1608	0.4403356189891997	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1396	0.38228142046574803	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCG	1337	0.3661248274804478	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTC	1103	0.3020461366573926	No Hit
CTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCT	838	0.229478388503078	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	735	0.2012728109185708	No Hit
GCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	669	0.18319933401976035	No Hit
TCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC	584	0.15992288649856506	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	490	0.13418187394571385	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGCA	20	7.0269586E-4	45.0	15
TCGTTAG	20	7.0269586E-4	45.0	1
GTACCGC	20	7.0269586E-4	45.0	9
TCACCCC	25	3.8855604E-5	45.0	13
GGCACGT	20	7.0269586E-4	45.0	11
GCGCGAC	40	6.7939254E-9	45.0	9
ACGGGGC	20	7.0269586E-4	45.0	5
GTTCGCG	25	3.8855604E-5	45.0	1
CGATCTA	20	7.0269586E-4	45.0	16
CGTCAAA	20	7.0269586E-4	45.0	18
AACACGT	20	7.0269586E-4	45.0	41
CCCGAAA	20	7.0269586E-4	45.0	45
CGTTTAT	330	0.0	43.636364	1
CGTTTTT	810	0.0	43.055553	1
CGTTTGG	110	0.0	42.954544	2
TAGGGTA	320	0.0	42.890625	5
TTAGGGT	485	0.0	42.216496	4
CGCTTGG	145	0.0	41.89655	2
CTTAGGG	710	0.0	41.514084	3
TCTTAGG	430	0.0	41.33721	2