SRR2934233.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934233.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1775137
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17521	0.9870224101013049	No Hit
CGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTG	2308	0.13001813381164384	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTT	2289	0.12894779388858438	No Hit
CTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGCT	2235	0.12590577515988907	TruSeq Adapter, Index 19 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC	2085	0.11745572313573543	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTC	2008	0.11311802976333657	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCT	1945	0.10956900791319205	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTAT	3630	44.2562	1
CGTTTTT	7970	43.30615	1
CGTTAGG	530	42.0283	2
TCGTTAG	265	41.603775	1
TTAGGGA	3395	40.493374	4
TTTAGGG	5930	40.219227	3
GTTTATT	3995	40.212765	2
TGCGTAG	140	40.17857	1
TAGGGAT	2095	40.059666	5
CGTAGGG	665	39.924812	3
GTTAGGG	2350	39.82979	3
TCGAGGG	1000	39.824997	3
TTAGGGG	5770	39.774696	4
CTTAGGG	2950	39.4322	3
TAGGGAG	2065	39.334137	5
GCTAGGG	1905	39.212597	3
TAGGGAC	1350	39.166668	5
TAGGGGA	2985	39.045227	5
CTAGGGA	2075	38.92771	4
CTTTAGG	1715	38.833817	2