##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934233.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1775137 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.38768162682655 33.0 31.0 34.0 31.0 34.0 2 32.58443658151455 34.0 31.0 34.0 31.0 34.0 3 32.567599571188026 34.0 31.0 34.0 31.0 34.0 4 36.076827309666804 37.0 35.0 37.0 35.0 37.0 5 35.172088689492696 37.0 35.0 37.0 35.0 37.0 6 25.886029641655828 37.0 0.0 37.0 0.0 37.0 7 30.997541034860973 37.0 19.0 37.0 17.0 37.0 8 34.76813789583564 37.0 32.0 37.0 32.0 37.0 9 37.305725135581085 39.0 37.0 39.0 35.0 39.0 10 37.4932137632194 39.0 37.0 39.0 35.0 39.0 11 37.529475189802255 39.0 37.0 39.0 35.0 39.0 12 37.18018834602625 39.0 37.0 39.0 34.0 39.0 13 37.166129712805265 39.0 37.0 39.0 34.0 39.0 14 38.12208297162416 40.0 38.0 41.0 33.0 41.0 15 38.31534185812137 40.0 38.0 41.0 33.0 41.0 16 38.46125115976964 40.0 38.0 41.0 34.0 41.0 17 38.46281441939411 40.0 38.0 41.0 34.0 41.0 18 38.37375368774354 40.0 37.0 41.0 34.0 41.0 19 38.315652820035865 40.0 37.0 41.0 34.0 41.0 20 38.16771099920739 40.0 36.0 41.0 34.0 41.0 21 38.044308692793855 40.0 36.0 41.0 34.0 41.0 22 38.053997522444746 40.0 36.0 41.0 34.0 41.0 23 37.99538570825801 40.0 35.0 41.0 34.0 41.0 24 37.95307235441546 40.0 35.0 41.0 34.0 41.0 25 37.84030979017394 40.0 35.0 41.0 34.0 41.0 26 37.799076916316885 40.0 35.0 41.0 34.0 41.0 27 37.76357993777382 40.0 35.0 41.0 34.0 41.0 28 37.67751559457101 40.0 35.0 41.0 34.0 41.0 29 37.61114156259489 40.0 35.0 41.0 33.0 41.0 30 37.33026915669044 39.0 35.0 41.0 33.0 41.0 31 37.25859806876878 39.0 35.0 41.0 33.0 41.0 32 37.09364291319487 39.0 35.0 41.0 32.0 41.0 33 36.87202227208379 39.0 35.0 41.0 32.0 41.0 34 36.59822537640757 39.0 35.0 41.0 31.0 41.0 35 36.46409939063858 39.0 35.0 41.0 31.0 41.0 36 36.37774999901416 39.0 35.0 41.0 30.0 41.0 37 36.30252256586393 39.0 35.0 41.0 30.0 41.0 38 36.214184595329826 39.0 35.0 41.0 30.0 41.0 39 36.12766338598091 39.0 35.0 41.0 30.0 41.0 40 36.02413560192819 39.0 35.0 41.0 29.0 41.0 41 35.8867890196644 39.0 35.0 41.0 29.0 41.0 42 35.834210542622905 39.0 35.0 41.0 29.0 41.0 43 35.76951581765238 39.0 35.0 41.0 29.0 41.0 44 35.64476995296701 38.0 35.0 40.0 28.0 41.0 45 35.60252588955106 38.0 35.0 40.0 28.0 41.0 46 35.56960786688577 38.0 35.0 40.0 28.0 41.0 47 35.51244495495277 38.0 35.0 40.0 28.0 41.0 48 35.44658919283413 38.0 35.0 40.0 28.0 41.0 49 35.41131135230689 38.0 35.0 40.0 27.0 41.0 50 35.313302578899545 38.0 35.0 40.0 27.0 41.0 51 34.33764210874992 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 20.0 10 29.0 11 17.0 12 16.0 13 23.0 14 32.0 15 56.0 16 102.0 17 198.0 18 377.0 19 820.0 20 1383.0 21 2290.0 22 3649.0 23 5906.0 24 9916.0 25 16447.0 26 22789.0 27 25770.0 28 26048.0 29 26719.0 30 30419.0 31 37574.0 32 51614.0 33 84038.0 34 122032.0 35 136244.0 36 157981.0 37 258461.0 38 360988.0 39 392914.0 40 261.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.91575241798239 4.258713552813107 52.304808023268066 20.520726005936442 2 25.005900952996868 3.832436595034637 50.08790870789128 21.073753744077216 3 20.499375541155416 3.9859458734734274 53.66149204258601 21.85318654278515 4 18.237071279568845 4.530298224869404 52.92318283039562 24.309447665166125 5 18.085871682016656 7.747852700946462 50.60048886367644 23.565786753360445 6 15.984062075208843 31.423546464301065 39.49064213072005 13.10174932977004 7 79.92216938748953 2.029758829881863 13.502281795714921 4.545789986913686 8 81.58992798865665 2.252220532837747 12.059801581511737 4.098049896993866 9 76.02370971930618 4.189648460935691 14.323063515661044 5.463578304097092 10 41.392917842397516 24.066931172072916 20.477349072212455 14.062801913317113 11 31.03974510136401 21.09262552693116 29.85251279197042 18.015116579734407 12 28.50320848475357 19.47055354037463 32.48329565549025 19.542942319381545 13 26.26597271083866 18.550117540223656 35.130246285216295 20.053663463721392 14 19.83553945413791 20.32738881562381 38.360532173009744 21.47653955722854 15 18.70266914609971 21.917406938168714 38.761120972634785 20.618802943096785 16 24.792846974627874 22.326614790858397 33.9161428103859 18.96439542412783 17 24.73814697119152 23.156128231229477 32.454565478608124 19.651159318970873 18 24.433607096241023 22.421368040889238 33.596280174431605 19.548744688438134 19 23.914379566196864 24.908387352638133 31.24074367217854 19.93648940898646 20 23.316510218647913 28.242270878247705 30.142574911119535 18.298643991984846 21 23.72504206717566 25.730690081948605 32.82929711903926 17.71497073183647 22 22.440521492143986 22.34548657371234 34.47063522421087 20.74335670993281 23 21.3468030918177 23.44962670486841 33.955351051777974 21.24821915153591 24 21.6613140281567 24.414509978666434 32.42972232565712 21.494453667519746 25 23.499989014932368 24.774256860174738 29.670949340811443 22.05480478408145 26 21.481553254762872 24.378681758084024 30.49223806387901 23.64752692327409 27 21.01049102125639 23.354986122197893 33.60743424310349 22.02708861344223 28 20.217707140350292 24.395694529492655 31.282374261817537 24.104224068339512 29 22.032834648818657 25.32548192055036 30.324532698039647 22.317150732591344 30 24.785185594125974 23.319214235295643 30.960370946017125 20.935229224561258 31 24.035553312223225 23.668595719654313 31.50680764357906 20.789043324543403 32 26.664195495896937 23.427262233844488 29.120681952998556 20.78786031726002 33 26.652252755702797 23.511875421446344 28.97190470369329 20.863967119157564 34 23.292850072980283 24.327474442817653 31.59654719607557 20.78312828812649 35 22.63768937270757 26.987325485300573 29.517045726611524 20.857939415380333 36 25.127187366383552 26.596426078663228 28.283957801566867 19.992428753386356 37 24.49557414441815 26.21786374798114 28.315391995096718 20.97117011250399 38 25.45814773732957 24.576469309129383 29.003226229862822 20.96215672367823 39 23.8833960421083 23.80931725269655 28.4553248566167 23.851961848578448 40 24.954468303009854 22.84437764521837 29.79910846317777 22.402045588594007 41 22.143417662974745 23.013547686741926 30.10370467180843 24.7393299784749 42 22.407847957650592 23.610628362768622 31.553339263392065 22.428184416188724 43 22.525529015506972 22.650589785464444 31.460219690085893 23.36366150894269 44 23.61395204989812 23.01377302146257 29.609207627354962 23.76306730128435 45 22.616902244728156 22.843701641056438 28.67463187348357 25.86476424073184 46 22.206173382674127 23.06774068705683 30.085283558395776 24.640802371873267 47 20.745666390819412 23.983275657033793 31.951674715810668 23.319383236336126 48 21.58323554745352 24.357331293302995 30.952146228713616 23.10728693052987 49 23.652315286087777 22.27625248079444 30.67954755041442 23.391884682703363 50 21.452766744200588 23.12666571650526 30.20820364850713 25.21236389078702 51 20.296517958895567 22.884487225493018 30.24915823398419 26.56983658162722 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 338.0 1 1155.0 2 1972.0 3 20841.5 4 39711.0 5 25649.5 6 11588.0 7 11053.5 8 10519.0 9 10541.5 10 10564.0 11 10297.5 12 10031.0 13 9586.5 14 9142.0 15 8533.0 16 7924.0 17 7417.5 18 6911.0 19 6784.0 20 6657.0 21 6828.0 22 6999.0 23 7307.0 24 7615.0 25 8826.5 26 12493.0 27 14948.0 28 17603.0 29 20258.0 30 23448.5 31 26639.0 32 29949.5 33 33260.0 34 37256.5 35 41253.0 36 44637.0 37 48021.0 38 51215.0 39 54409.0 40 59508.5 41 64608.0 42 71278.0 43 77948.0 44 88951.5 45 99955.0 46 119649.5 47 139344.0 48 156738.0 49 174132.0 50 172609.0 51 171086.0 52 154412.0 53 137738.0 54 124554.5 55 111371.0 56 104411.0 57 97451.0 58 92226.5 59 87002.0 60 78465.5 61 69929.0 62 61716.0 63 53503.0 64 46210.5 65 38918.0 66 32731.5 67 26545.0 68 22788.5 69 19032.0 70 15401.0 71 11770.0 72 9492.0 73 7214.0 74 5750.5 75 3384.5 76 2482.0 77 1775.0 78 1068.0 79 797.0 80 526.0 81 400.5 82 275.0 83 175.0 84 75.0 85 61.5 86 48.0 87 35.0 88 22.0 89 15.0 90 8.0 91 5.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1775137.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.190921610066574 #Duplication Level Percentage of deduplicated Percentage of total 1 73.88345444978786 26.000268538234096 2 8.721183106766262 6.138129421144967 3 3.2596118847084132 3.441262389420454 4 1.8828129540404408 2.6503169228822014 5 1.3733564980394817 2.416484043259148 6 1.1342808109256612 2.394983226065261 7 1.0285802622587208 2.533768116516585 8 0.900084906950673 2.5339853922324163 9 0.8073219266868634 2.55693623725128 >10 6.856344191379975 40.83373205456819 >50 0.09424405152341254 2.270463519079465 >100 0.055043156084008754 3.4052616675749143 >500 0.0011045402544674877 0.27597550552191125 >1k 0.0023931705513462235 1.4133703295707836 >5k 0.0 0.0 >10k+ 1.8409004241124794E-4 1.1350626366782646 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17521 0.9870224101013049 No Hit CGCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTG 2308 0.13001813381164384 TruSeq Adapter, Index 19 (95% over 21bp) CGTTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTT 2289 0.12894779388858438 No Hit CTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGCT 2235 0.12590577515988907 TruSeq Adapter, Index 19 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTCTGC 2085 0.11745572313573543 TruSeq Adapter, Index 13 (95% over 22bp) CGTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCTTC 2008 0.11311802976333657 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCATGGACTGTCGTATGCCGTCT 1945 0.10956900791319205 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.633368016102419E-5 0.0 0.0 0.1322714810180848 0.0 2 5.633368016102419E-5 0.0 0.0 0.4037998193942214 0.0 3 5.633368016102419E-5 0.0 0.0 0.677750506017282 0.0 4 5.633368016102419E-5 0.0 0.0 0.9977821430120605 0.0 5 5.633368016102419E-5 0.0 0.0 1.6839263673733351 0.0 6 5.633368016102419E-5 0.0 0.0 2.665822412579987 0.0 7 5.633368016102419E-5 0.0 0.0 3.844097666827969 0.0 8 5.633368016102419E-5 0.0 0.0 5.436031134498351 0.0 9 5.633368016102419E-5 0.0 0.0 6.722861390416627 0.0 10 5.633368016102419E-5 0.0 0.0 8.149061171053276 0.0 11 5.633368016102419E-5 0.0 0.0 9.82628383048745 0.0 12 1.1266736032204839E-4 0.0 0.0 10.993348682383388 0.0 13 1.1266736032204839E-4 0.0 0.0 11.455904530185558 0.0 14 1.1266736032204839E-4 0.0 0.0 11.815482410653376 0.0 15 1.1266736032204839E-4 0.0 0.0 12.055407554459176 0.0 16 1.1266736032204839E-4 0.0 0.0 12.402873693692374 0.0 17 1.1266736032204839E-4 0.0 0.0 12.860359510280052 0.0 18 1.1266736032204839E-4 0.0 0.0 13.325844709450594 0.0 19 1.1266736032204839E-4 0.0 0.0 13.706322385258153 0.0 20 1.1266736032204839E-4 0.0 0.0 14.144091413789472 0.0 21 1.1266736032204839E-4 0.0 0.0 14.720497629197071 0.0 22 1.6900104048307257E-4 0.0 0.0 15.350533508117964 0.0 23 1.6900104048307257E-4 0.0 0.0 15.92063035134753 0.0 24 1.6900104048307257E-4 0.0 0.0 16.384538207473565 0.0 25 1.6900104048307257E-4 0.0 0.0 16.817124537430068 0.0 26 1.6900104048307257E-4 0.0 0.0 17.201038567727448 0.0 27 1.6900104048307257E-4 0.0 0.0 17.641229944505692 0.0 28 1.6900104048307257E-4 0.0 0.0 18.034664366750285 0.0 29 1.6900104048307257E-4 0.0 0.0 18.51017696098949 5.633368016102419E-5 30 2.2533472064409677E-4 0.0 0.0 19.129227772278984 5.633368016102419E-5 31 2.2533472064409677E-4 0.0 0.0 19.596909984975806 5.633368016102419E-5 32 2.2533472064409677E-4 0.0 0.0 20.056367480369122 5.633368016102419E-5 33 2.2533472064409677E-4 0.0 0.0 20.501572554681694 5.633368016102419E-5 34 2.2533472064409677E-4 0.0 0.0 20.997252606418545 5.633368016102419E-5 35 2.2533472064409677E-4 0.0 0.0 21.540196615810498 5.633368016102419E-5 36 2.2533472064409677E-4 0.0 0.0 22.00624515178265 5.633368016102419E-5 37 2.2533472064409677E-4 0.0 0.0 22.499164853191612 5.633368016102419E-5 38 2.2533472064409677E-4 0.0 0.0 23.108751606214057 5.633368016102419E-5 39 2.2533472064409677E-4 0.0 0.0 24.324432424088958 5.633368016102419E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTAT 3630 0.0 44.2562 1 CGTTTTT 7970 0.0 43.30615 1 CGTTAGG 530 0.0 42.0283 2 TCGTTAG 265 0.0 41.603775 1 TTAGGGA 3395 0.0 40.493374 4 TTTAGGG 5930 0.0 40.219227 3 GTTTATT 3995 0.0 40.212765 2 TGCGTAG 140 0.0 40.17857 1 TAGGGAT 2095 0.0 40.059666 5 CGTAGGG 665 0.0 39.924812 3 GTTAGGG 2350 0.0 39.82979 3 TCGAGGG 1000 0.0 39.824997 3 TTAGGGG 5770 0.0 39.774696 4 CTTAGGG 2950 0.0 39.4322 3 TAGGGAG 2065 0.0 39.334137 5 GCTAGGG 1905 0.0 39.212597 3 TAGGGAC 1350 0.0 39.166668 5 TAGGGGA 2985 0.0 39.045227 5 CTAGGGA 2075 0.0 38.92771 4 CTTTAGG 1715 0.0 38.833817 2 >>END_MODULE