SRR2934232.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934232.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1699795
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4692	0.2760332863668854	No Hit
CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT	3594	0.21143726155212836	Illumina PCR Primer Index 5 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	3174	0.18672839960112836	Illumina PCR Primer Index 5 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	2385	0.14031103750746415	Illumina PCR Primer Index 5 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGC	2374	0.1396639006468427	No Hit
TCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	2350	0.13825196567821413	Illumina PCR Primer Index 5 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTC	2123	0.12489741409993557	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCG	2029	0.11936733547280702	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1834	0.10789536385269988	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGAAT	100	0.0	45.0	12
CGTAAGC	20	7.0342416E-4	45.0	44
CGTTAGG	450	0.0	43.0	2
TCGTTAG	315	0.0	42.857143	1
TTAGGGA	3675	0.0	41.87755	4
TTTAGGG	6230	0.0	41.857944	3
TAGGGAC	1645	0.0	41.854103	5
CTTAGGG	3000	0.0	40.65	3
TCGAGGG	890	0.0	40.449436	3
GCGTAGG	195	0.0	40.384617	2
TAGGGAA	1620	0.0	40.13889	5
CGTTTAT	955	0.0	40.052357	1
TACGGGT	45	1.9292202E-8	40.000004	4
TAGGGAT	1980	0.0	39.772728	5
CTAGGGG	2745	0.0	39.7541	4
TTTCGCG	385	0.0	39.74026	1
TTAGGGG	5785	0.0	39.671566	4
TAGGGCG	675	0.0	39.666668	5
CTAGGGA	2065	0.0	39.661015	4
GCTAGGG	1805	0.0	39.63989	3