SRR2934229.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934229.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1128005
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6299	0.5584195105518149	No Hit
CTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGCT	2523	0.22366922132437358	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2430	0.21542457701871887	No Hit
CCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	1773	0.1571801543432875	No Hit
TCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	1619	0.1435277325898378	No Hit
GCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	1548	0.13723343424896164	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTG	1335	0.1183505392263332	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGCTAG	30	2.165465E-6	45.000004	1
TATTGCG	20	7.03323E-4	45.000004	1
CCCGTAG	20	7.03323E-4	45.000004	1
GCGATCG	30	2.165465E-6	45.000004	9
TCCCGCA	30	2.165465E-6	45.000004	17
TACGGAC	25	3.89076E-5	45.0	4
CCGTCGG	25	3.89076E-5	45.0	2
CGTTTAT	1660	0.0	44.32229	1
GCTACGA	140	0.0	43.392857	10
CGTTTTT	3735	0.0	43.07229	1
CGGTAGT	115	0.0	43.043476	12
TAGGGCG	570	0.0	42.236843	5
TTAGGGA	2730	0.0	42.115387	4
CCGTAGG	150	0.0	42.0	2
CGAATAT	140	0.0	41.785713	14
TACGGTT	65	0.0	41.53846	33
AGGGCGA	845	0.0	41.53846	6
TCCGTAG	125	0.0	41.399998	1
TTTAGGG	4405	0.0	40.913734	3
CGTTAGG	275	0.0	40.909092	2