##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934220.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 327684 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.351509380989 33.0 31.0 34.0 31.0 34.0 2 32.51312239840822 34.0 31.0 34.0 31.0 34.0 3 32.57480682608855 34.0 31.0 34.0 31.0 34.0 4 36.045623222372775 37.0 35.0 37.0 35.0 37.0 5 35.17469574346016 37.0 35.0 37.0 35.0 37.0 6 26.030297481720194 37.0 0.0 37.0 0.0 37.0 7 31.079393562090306 37.0 19.0 37.0 17.0 37.0 8 34.752337617949 37.0 32.0 37.0 32.0 37.0 9 37.296822548552875 39.0 37.0 39.0 35.0 39.0 10 37.40615654105785 39.0 37.0 39.0 35.0 39.0 11 37.40395930225461 39.0 37.0 39.0 35.0 39.0 12 36.96873512286227 39.0 35.0 39.0 34.0 39.0 13 36.83019006115648 39.0 35.0 39.0 33.0 39.0 14 37.90991626078783 40.0 36.0 41.0 33.0 41.0 15 38.104442084447214 40.0 36.0 41.0 33.0 41.0 16 38.24539190195432 40.0 36.0 41.0 34.0 41.0 17 38.24270028442036 40.0 36.0 41.0 34.0 41.0 18 38.24514471258896 40.0 36.0 41.0 34.0 41.0 19 38.235174741519266 40.0 36.0 41.0 34.0 41.0 20 38.14556401899391 40.0 36.0 41.0 34.0 41.0 21 38.025848073143635 40.0 36.0 41.0 34.0 41.0 22 37.99690555535211 40.0 36.0 41.0 34.0 41.0 23 37.96496319625005 40.0 35.0 41.0 34.0 41.0 24 37.92219638432148 40.0 35.0 41.0 34.0 41.0 25 37.80356685099059 40.0 35.0 41.0 34.0 41.0 26 37.75990283321737 39.0 35.0 41.0 34.0 41.0 27 37.73755813527667 40.0 35.0 41.0 34.0 41.0 28 37.70446832924403 40.0 35.0 41.0 34.0 41.0 29 37.71284835390193 39.0 35.0 41.0 34.0 41.0 30 37.50302730679557 39.0 35.0 41.0 33.0 41.0 31 37.49310311153428 39.0 35.0 41.0 33.0 41.0 32 37.42402741665751 39.0 35.0 41.0 33.0 41.0 33 37.33139243905714 39.0 35.0 41.0 33.0 41.0 34 37.26932654630681 39.0 35.0 41.0 33.0 41.0 35 37.23027062657926 39.0 35.0 41.0 33.0 41.0 36 37.129249520879874 39.0 35.0 41.0 33.0 41.0 37 37.06493451007678 39.0 35.0 41.0 33.0 41.0 38 37.0109007458405 39.0 35.0 41.0 33.0 41.0 39 36.97367280672843 39.0 35.0 41.0 33.0 41.0 40 36.87387544097362 39.0 35.0 41.0 32.0 41.0 41 36.78807021398664 39.0 35.0 41.0 32.0 41.0 42 36.77626921058093 39.0 35.0 41.0 32.0 41.0 43 36.70060790273556 39.0 35.0 41.0 32.0 41.0 44 36.55433588457172 39.0 35.0 41.0 31.0 41.0 45 36.501345808766985 39.0 35.0 40.0 31.0 41.0 46 36.44524602971155 38.0 35.0 40.0 31.0 41.0 47 36.36972204929139 38.0 35.0 40.0 31.0 41.0 48 36.367189121226545 38.0 35.0 40.0 31.0 41.0 49 36.39851808449604 38.0 35.0 40.0 31.0 41.0 50 36.27964136179978 38.0 35.0 40.0 31.0 41.0 51 35.362114109935185 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 0.0 11 2.0 12 3.0 13 0.0 14 5.0 15 2.0 16 12.0 17 34.0 18 53.0 19 106.0 20 158.0 21 274.0 22 477.0 23 617.0 24 1092.0 25 1691.0 26 2281.0 27 2769.0 28 3021.0 29 3587.0 30 4533.0 31 6071.0 32 8990.0 33 15969.0 34 24845.0 35 34331.0 36 28925.0 37 47484.0 38 67700.0 39 72608.0 40 41.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.284981872779873 4.351143174521796 53.663590532342134 17.700284420356198 2 19.90271114854555 5.709463995800832 53.49940796621135 20.88841688944227 3 20.54113108970838 5.454340156980505 51.5392878504901 22.46524090282101 4 18.854750308223778 4.510748159812502 52.26742837611845 24.367073155845265 5 18.65028503070031 7.867945947925441 48.18209006237717 25.299678958997085 6 16.37156528850966 31.66648356343306 39.1392316988318 12.822719449225472 7 83.03426471844826 1.5844533147788724 10.736868446430098 4.64441352034277 8 83.85883961377425 2.629667606596599 8.464252145359554 5.047240634269602 9 79.19336922156712 4.226938147727688 10.493646317793972 6.08604631291122 10 45.13067467438142 23.63160850087279 17.353914136790323 13.883802687955468 11 33.577165806081474 23.237326204514105 24.75403132285983 18.431476666544597 12 31.94998840346187 20.117552275973193 28.99531255721976 18.937146763345176 13 24.798281270980578 26.651896339156018 29.7524444281686 18.797377961694803 14 18.837050328975476 29.760684073680743 30.589531377790795 20.812734219552983 15 16.39567388093407 24.18396992224216 39.247262606657635 20.173093590166136 16 19.282296358687027 23.03713333577471 36.0081664042187 21.672403901319566 17 18.92219333260092 23.027673002038547 29.709109996215865 28.341023669144665 18 21.582378144798035 22.40725821218003 33.36232467865383 22.648038964368112 19 22.9895264950379 24.61914527410554 29.66577556426313 22.725552666593426 20 26.853615068175436 25.0057982690641 29.61603251913429 18.524554143626176 21 24.619450446161544 25.428461566631267 29.576360151853613 20.375727835353572 22 21.875343318563008 24.206857826442548 29.439948242819302 24.477850612175146 23 20.52526214279611 26.19596928748428 28.364521917457065 24.914246652262545 24 22.550689078502458 23.43629838502948 31.280440912586517 22.732571623881544 25 19.725406184006545 23.95997363313436 30.762869105601737 25.551751077257357 26 18.74763491656596 29.183908887830963 28.776809365120055 23.291646830483025 27 20.28417621855202 28.309285775320127 30.195859425544118 21.210678580583732 28 17.52572600432124 24.655460748770157 33.83473102134984 23.98408222555877 29 17.64230172971521 22.550689078502458 35.74114085521417 24.06586833656816 30 21.51005236752481 24.27246981848366 30.871510357539584 23.345967456451948 31 23.293172690763054 24.53583330281613 27.181980200437007 24.989013805983813 32 23.6084154246164 24.638371113633866 29.08961072252536 22.663602739224377 33 23.64442572722501 24.28406635661186 27.354707584135934 24.716800332027198 34 18.554461005114682 23.997814968079005 29.68622209201548 27.761501934790832 35 18.819960693839185 23.78083763625932 31.256942664274117 26.142259005627373 36 24.266366377363557 22.689542363984817 30.709463995800835 22.334627262850795 37 21.229599248056054 25.025024108592426 30.39910401484357 23.346272628507954 38 18.866346846351973 25.43822707242343 28.830519646976967 26.864906434247626 39 18.989026012866052 24.067394196848184 31.56486126878334 25.378718521502424 40 22.34561345686698 22.44815126768472 28.865309261361556 26.34092601408674 41 17.73721023913282 22.977319612797693 30.75981738504169 28.525652763027797 42 21.294600895985155 21.756021044664983 32.016210739615 24.933167319734867 43 22.1402326631755 21.55247128330953 31.178818617936795 25.128477435578176 44 20.232602141087145 23.050560906238935 30.01061998754898 26.706216965124934 45 20.081541973364583 23.498553484454536 27.64706241378889 28.77284212839199 46 22.655668265768238 23.06124192819912 29.900758047387114 24.382331758645527 47 17.97524444281686 23.53700516351119 32.220370845082456 26.267379548589492 48 19.497442658170677 21.704141795144103 33.322652311373155 25.475763235312073 49 20.28722793911207 19.090037963403766 34.83294881654277 25.789785280941395 50 20.297908961072253 21.52195407770901 31.174241037096717 27.00589592412202 51 18.107383943067102 22.37796169480353 27.94002758755386 31.574626774575503 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 42.0 1 183.5 2 325.0 3 1460.5 4 2596.0 5 1658.5 6 721.0 7 716.5 8 712.0 9 848.5 10 985.0 11 1008.5 12 1032.0 13 1018.0 14 1004.0 15 921.5 16 839.0 17 833.5 18 828.0 19 805.0 20 782.0 21 804.0 22 826.0 23 1017.0 24 1208.0 25 1539.0 26 1935.0 27 2000.0 28 2618.0 29 3236.0 30 3841.5 31 4447.0 32 4740.5 33 5034.0 34 6146.0 35 7258.0 36 7372.5 37 7487.0 38 8893.0 39 10299.0 40 12784.0 41 15269.0 42 18741.5 43 22214.0 44 24419.0 45 26624.0 46 30316.5 47 34009.0 48 36676.0 49 39343.0 50 37356.5 51 35370.0 52 30246.0 53 25122.0 54 21641.0 55 18160.0 56 16409.5 57 14659.0 58 13678.0 59 12697.0 60 11171.0 61 9645.0 62 8364.0 63 7083.0 64 6008.0 65 4933.0 66 4097.5 67 3262.0 68 2681.5 69 2101.0 70 1789.0 71 1477.0 72 1242.0 73 1007.0 74 833.5 75 434.0 76 208.0 77 198.0 78 188.0 79 132.5 80 77.0 81 46.5 82 16.0 83 16.5 84 17.0 85 9.5 86 2.0 87 4.0 88 6.0 89 3.5 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 327684.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.005900776253156 #Duplication Level Percentage of deduplicated Percentage of total 1 68.16562866063643 21.817023472632478 2 12.991168028326122 8.315880697644765 3 4.801168724023843 4.609971893734713 4 2.546888110571796 3.2606179262071913 5 1.5449017235348377 2.472298563625925 6 1.0893186334357305 2.091877445728061 7 0.8820082757444996 1.976062855011881 8 0.7245409866213005 1.855166954090393 9 0.6487978530614983 1.868882373803915 >10 6.376357041210125 42.8130019112419 >50 0.1754046324293757 3.5849748791455243 >100 0.04584439256676865 2.735221958241202 >500 0.002989851689137086 0.7007909786887371 >1k 0.00498308614856181 1.8982280902033113 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGCT 1379 0.4208322652311373 TruSeq Adapter, Index 16 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 1350 0.4119822756069872 TruSeq Adapter, Index 19 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1180 0.36010302608610734 No Hit GCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 1034 0.3155479059093517 TruSeq Adapter, Index 19 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 1008 0.30761343245321715 TruSeq Adapter, Index 19 (95% over 21bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGC 836 0.2551238388203269 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCG 768 0.23437213901197496 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTC 593 0.1809670292110692 No Hit CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 478 0.14587224277047398 No Hit GCTGTATCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 377 0.11504986511395125 TruSeq Adapter, Index 16 (95% over 22bp) CTGTCACTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGCT 372 0.11352400483392536 TruSeq Adapter, Index 16 (95% over 23bp) TCCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTG 359 0.10955676810585809 TruSeq Adapter, Index 16 (95% over 21bp) CCTGTATCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 346 0.1055895313777908 TruSeq Adapter, Index 16 (95% over 22bp) TCTGTATCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC 341 0.1040636710977649 TruSeq Adapter, Index 16 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.44188913709549443 0.0 2 0.0 0.0 0.0 1.5652274752505462 0.0 3 0.0 0.0 0.0 2.1703836623088097 0.0 4 0.0 0.0 0.0 2.8524432074803774 0.0 5 0.0 0.0 0.0 3.9919556646037035 0.0 6 0.0 0.0 0.0 4.591313582597869 0.0 7 0.0 0.0 0.0 5.390864369331429 0.0 8 0.0 0.0 0.0 6.667399079601079 0.0 9 0.0 0.0 0.0 7.172458832289645 0.0 10 0.0 0.0 0.0 8.473712479095715 0.0 11 0.0 0.0 0.0 10.75823049035046 0.0 12 0.0 0.0 0.0 13.065331233749587 0.0 13 3.0517205600517574E-4 0.0 0.0 13.704361519024426 0.0 14 3.0517205600517574E-4 0.0 0.0 13.906995764211862 0.0 15 3.0517205600517574E-4 0.0 0.0 14.247872950769644 0.0 16 3.0517205600517574E-4 0.0 0.0 14.962585905933766 0.0 17 3.0517205600517574E-4 0.0 0.0 16.01695535943165 0.0 18 3.0517205600517574E-4 0.0 0.0 17.195835011779643 0.0 19 3.0517205600517574E-4 0.0 0.0 18.033837477569854 0.0 20 3.0517205600517574E-4 0.0 0.0 18.897474396064503 0.0 21 3.0517205600517574E-4 0.0 0.0 20.086729898316673 0.0 22 3.0517205600517574E-4 0.0 0.0 21.35899219980225 0.0 23 3.0517205600517574E-4 0.0 0.0 22.450897816188768 0.0 24 3.0517205600517574E-4 0.0 0.0 23.285848561418927 0.0 25 3.0517205600517574E-4 0.0 0.0 23.999646000415034 0.0 26 3.0517205600517574E-4 0.0 0.0 24.62738491961768 0.0 27 3.0517205600517574E-4 0.0 0.0 25.250241085924245 0.0 28 3.0517205600517574E-4 0.0 0.0 25.871876564006786 0.0 29 3.0517205600517574E-4 0.0 0.0 26.528606828529924 0.0 30 3.0517205600517574E-4 0.0 0.0 27.303438678727066 0.0 31 3.0517205600517574E-4 0.0 0.0 27.981225815114563 0.0 32 3.0517205600517574E-4 0.0 0.0 28.636125047301668 0.0 33 3.0517205600517574E-4 0.0 0.0 29.210764028759414 0.0 34 3.0517205600517574E-4 0.0 0.0 29.862306368330465 0.0 35 3.0517205600517574E-4 0.0 0.0 30.5895313777908 0.0 36 3.0517205600517574E-4 0.0 0.0 31.20933582353731 0.0 37 3.0517205600517574E-4 0.0 0.0 31.851112657316193 0.0 38 3.0517205600517574E-4 0.0 0.0 32.42025854176585 0.0 39 3.0517205600517574E-4 0.0 0.0 33.236898963635696 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTATG 20 7.025896E-4 45.000004 11 GTCGCTA 20 7.025896E-4 45.000004 19 TCGTTAG 40 6.7902874E-9 45.000004 1 CTCCGTA 20 7.025896E-4 45.000004 20 GACGTCG 20 7.025896E-4 45.000004 18 CATTGCC 20 7.025896E-4 45.000004 42 GCTATCG 20 7.025896E-4 45.000004 22 ACATTGC 20 7.025896E-4 45.000004 41 CGCGCGT 20 7.025896E-4 45.000004 14 CCAGCCG 20 7.025896E-4 45.000004 44 AGGCGTT 20 7.025896E-4 45.000004 36 GTAGGGC 40 6.7902874E-9 45.000004 4 TATTGAC 20 7.025896E-4 45.000004 16 CCGTATG 20 7.025896E-4 45.000004 22 AGACGAC 20 7.025896E-4 45.000004 38 GCCGATG 40 6.7902874E-9 45.000004 9 GTAGCCG 20 7.025896E-4 45.000004 31 TCGCTAT 20 7.025896E-4 45.000004 20 TGTTCCC 40 6.7902874E-9 45.000004 22 ACGTGGG 20 7.025896E-4 45.000004 3 >>END_MODULE