SRR2934218.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934218.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	729275
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	4127	0.5659044941894348	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	3899	0.5346405676870866	No Hit
TCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	3493	0.47896883891536113	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	3221	0.44167152308799834	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2253	0.30893695793767784	No Hit
TCCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG	1437	0.19704501045558948	No Hit
TCTGTATCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	1287	0.17647663775667616	No Hit
GCTGTATCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	1259	0.17263720818621234	No Hit
CTGTCACTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	1251	0.17154022830893698	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG	1179	0.16166740941345858	No Hit
CCTGTATCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	1089	0.1493263857941106	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1070	0.14672105858558157	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC	967	0.1325974426656611	No Hit
TTCCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT	890	0.1220390113468856	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	861	0.11806245929176237	No Hit
GCCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG	852	0.11682835692982756	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	823	0.11285180487470434	No Hit
TGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG	763	0.10462445579513902	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGA	20	7.0315896E-4	45.0	9
GTCGCGT	20	7.0315896E-4	45.0	11
ACACGGT	20	7.0315896E-4	45.0	35
CACGGTA	20	7.0315896E-4	45.0	36
CGAAACG	20	7.0315896E-4	45.0	24
CGACGGA	20	7.0315896E-4	45.0	17
TAGCGAA	20	7.0315896E-4	45.0	41
TTACTCG	20	7.0315896E-4	45.0	43
CGATTGA	40	6.8084773E-9	45.0	10
CCGCTAG	20	7.0315896E-4	45.0	1
TCGGCGC	20	7.0315896E-4	45.0	13
CCGTCCA	20	7.0315896E-4	45.0	45
GCATTCG	20	7.0315896E-4	45.0	36
CGCTAGG	95	0.0	45.0	2
TCGCTAG	50	2.1827873E-11	45.0	1
GAAACCG	20	7.0315896E-4	45.0	22
CTCGCTA	20	7.0315896E-4	45.0	26
GGACGGC	25	3.889398E-5	45.0	9
GCGATAC	25	3.889398E-5	45.0	9
TACTCGT	20	7.0315896E-4	45.0	44