SRR2934216.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934216.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	914086
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC	5238	0.5730314215511451	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCG	4515	0.4939360191491829	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC	3869	0.42326433180247813	No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	1938	0.2120150620401144	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1767	0.1933078506836337	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	1626	0.17788260623179877	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1428	0.1562216246611369	No Hit
TCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	1187	0.12985649052714954	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCT	1186	0.129747091630328	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTC	1175	0.12854370376529123	No Hit
GAATCAGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC	1147	0.12548053465428854	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCGAATCAT	1075	0.11760381408313879	No Hit
CTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGCT	1037	0.11344665600392086	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	945	0.10338195749634062	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTTAG	35	1.2115561E-7	45.000004	1
TCGTTGA	75	0.0	45.0	24
CTGTCGA	20	7.032528E-4	45.0	12
TACGCAC	20	7.032528E-4	45.0	28
CGAATAC	20	7.032528E-4	45.0	24
CGATGCA	25	3.8901762E-5	45.0	10
TTTAGGG	3005	0.0	40.956738	3
AGGGATC	370	0.0	40.743244	6
GTTAGGG	1215	0.0	40.37037	3
TAGGGAT	790	0.0	40.158226	5
TTAGGGA	1570	0.0	40.127388	4
TTAGGGG	3075	0.0	39.878048	4
CGTTGAT	85	0.0	39.705883	25
AATCGTT	85	0.0	39.705883	22
TACGGCT	575	0.0	39.52174	7
TAGGGCC	325	0.0	39.461536	5
AGGGCGA	565	0.0	39.42478	6
GTTTGCG	120	0.0	39.374996	1
TCAGGGA	755	0.0	39.33775	4
TAGGGCA	510	0.0	39.2647	5