FastQCFastQC Report
Sat 14 Jan 2017
SRR2934214.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934214.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences890012
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGCT43340.48695972638571167No Hit
TCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC38700.43482559785710756No Hit
CCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC36970.415387657694503No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGC33800.3797701604023317No Hit
GCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC30340.3408942800771226No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCG28540.32066983366516405No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTC21870.2457270239052957No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21050.23651366498429233No Hit
TCCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTG14460.16246971950939987No Hit
TCTGTATCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC13600.1528069284459086No Hit
CGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTG12970.1457283722017231No Hit
CTGTCACTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGCT12570.14123405077684345No Hit
GCTGTATCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC11420.12831287668031444No Hit
CCTGTATCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC10520.11820065347433518No Hit
TTCCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCT10070.11314454187134557No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCC9430.10595362759153809No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGCCG302.1649466E-645.0000041
CCTTCGC207.032429E-445.036
CGGAATC207.032429E-445.015
CGGCGTA207.032429E-445.019
TCGTTGA207.032429E-445.024
TCGTTCA253.8900936E-545.016
AGATCGT406.8121153E-945.023
CTCGTCC406.8121153E-945.037
TTCAGCG253.8900936E-545.01
GCGGTAG253.8900936E-545.01
TAGACGA207.032429E-445.034
GCGCGAC502.1827873E-1145.09
ACCGCTA207.032429E-445.012
ACACCCG253.8900936E-545.040
TTTCGCG1750.045.01
GTCTCCG253.8900936E-545.01
GTTAGCG207.032429E-445.01
CCTCGTC406.8121153E-945.036
CCGTCGG253.8900936E-545.02
GCCGATG502.1827873E-1145.09