SRR2934214.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934214.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	890012
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGCT	4334	0.48695972638571167	No Hit
TCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	3870	0.43482559785710756	No Hit
CCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	3697	0.415387657694503	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGC	3380	0.3797701604023317	No Hit
GCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	3034	0.3408942800771226	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCG	2854	0.32066983366516405	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTC	2187	0.2457270239052957	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2105	0.23651366498429233	No Hit
TCCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTG	1446	0.16246971950939987	No Hit
TCTGTATCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	1360	0.1528069284459086	No Hit
CGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTG	1297	0.1457283722017231	No Hit
CTGTCACTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGCT	1257	0.14123405077684345	No Hit
GCTGTATCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	1142	0.12831287668031444	No Hit
CCTGTATCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	1052	0.11820065347433518	No Hit
TTCCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCT	1007	0.11314454187134557	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCC	943	0.10595362759153809	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGCCG	30	2.1649466E-6	45.000004	1
CCTTCGC	20	7.032429E-4	45.0	36
CGGAATC	20	7.032429E-4	45.0	15
CGGCGTA	20	7.032429E-4	45.0	19
TCGTTGA	20	7.032429E-4	45.0	24
TCGTTCA	25	3.8900936E-5	45.0	16
AGATCGT	40	6.8121153E-9	45.0	23
CTCGTCC	40	6.8121153E-9	45.0	37
TTCAGCG	25	3.8900936E-5	45.0	1
GCGGTAG	25	3.8900936E-5	45.0	1
TAGACGA	20	7.032429E-4	45.0	34
GCGCGAC	50	2.1827873E-11	45.0	9
ACCGCTA	20	7.032429E-4	45.0	12
ACACCCG	25	3.8900936E-5	45.0	40
TTTCGCG	175	0.0	45.0	1
GTCTCCG	25	3.8900936E-5	45.0	1
GTTAGCG	20	7.032429E-4	45.0	1
CCTCGTC	40	6.8121153E-9	45.0	36
CCGTCGG	25	3.8900936E-5	45.0	2
GCCGATG	50	2.1827873E-11	45.0	9