Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934214.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 890012 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGCT | 4334 | 0.48695972638571167 | No Hit |
TCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC | 3870 | 0.43482559785710756 | No Hit |
CCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC | 3697 | 0.415387657694503 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGC | 3380 | 0.3797701604023317 | No Hit |
GCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC | 3034 | 0.3408942800771226 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCG | 2854 | 0.32066983366516405 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTC | 2187 | 0.2457270239052957 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2105 | 0.23651366498429233 | No Hit |
TCCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTG | 1446 | 0.16246971950939987 | No Hit |
TCTGTATCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC | 1360 | 0.1528069284459086 | No Hit |
CGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTG | 1297 | 0.1457283722017231 | No Hit |
CTGTCACTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGCT | 1257 | 0.14123405077684345 | No Hit |
GCTGTATCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC | 1142 | 0.12831287668031444 | No Hit |
CCTGTATCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC | 1052 | 0.11820065347433518 | No Hit |
TTCCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCT | 1007 | 0.11314454187134557 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCC | 943 | 0.10595362759153809 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTCGCCG | 30 | 2.1649466E-6 | 45.000004 | 1 |
CCTTCGC | 20 | 7.032429E-4 | 45.0 | 36 |
CGGAATC | 20 | 7.032429E-4 | 45.0 | 15 |
CGGCGTA | 20 | 7.032429E-4 | 45.0 | 19 |
TCGTTGA | 20 | 7.032429E-4 | 45.0 | 24 |
TCGTTCA | 25 | 3.8900936E-5 | 45.0 | 16 |
AGATCGT | 40 | 6.8121153E-9 | 45.0 | 23 |
CTCGTCC | 40 | 6.8121153E-9 | 45.0 | 37 |
TTCAGCG | 25 | 3.8900936E-5 | 45.0 | 1 |
GCGGTAG | 25 | 3.8900936E-5 | 45.0 | 1 |
TAGACGA | 20 | 7.032429E-4 | 45.0 | 34 |
GCGCGAC | 50 | 2.1827873E-11 | 45.0 | 9 |
ACCGCTA | 20 | 7.032429E-4 | 45.0 | 12 |
ACACCCG | 25 | 3.8900936E-5 | 45.0 | 40 |
TTTCGCG | 175 | 0.0 | 45.0 | 1 |
GTCTCCG | 25 | 3.8900936E-5 | 45.0 | 1 |
GTTAGCG | 20 | 7.032429E-4 | 45.0 | 1 |
CCTCGTC | 40 | 6.8121153E-9 | 45.0 | 36 |
CCGTCGG | 25 | 3.8900936E-5 | 45.0 | 2 |
GCCGATG | 50 | 2.1827873E-11 | 45.0 | 9 |