SRR2934213.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934213.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1866860
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7197	0.38551364322980836	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGCT	4151	0.2223519706887501	RNA PCR Primer, Index 38 (96% over 26bp)
CCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	3507	0.18785554353299122	RNA PCR Primer, Index 38 (96% over 25bp)
TCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	2610	0.1398069485660414	RNA PCR Primer, Index 27 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	2344	0.12555842430605402	RNA PCR Primer, Index 27 (95% over 23bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2318	0.12416571140846126	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2266	0.12138028561327577	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTAT	1160	43.64224	1
CGTTAGG	505	43.217823	2
GCGTTAG	180	41.25	1
GTTAGGG	2595	41.184975	3
CTTAGGG	3285	40.89041	3
TTAGGGA	3260	40.72086	4
TTTAGGG	6340	40.705837	3
CGTTTTT	3515	40.64723	1
TCGTTAG	300	40.5	1
TTAGGGG	6370	40.37284	4
TCTTAGG	1810	40.027626	2
TTTTAGG	3435	39.628822	2
TAGGGGG	5285	39.422894	5
TTAGGGT	1165	39.20601	4
CTAGGGG	2860	39.09965	4
TAGGGAA	1600	39.09375	5
TAGGGAG	2120	39.056602	5
TAGGGTA	680	39.044117	5
CGTAGGG	855	38.94737	3
TGTTAGG	1820	38.942307	2