SRR2934210.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934210.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	494132
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	1470	0.2974913585843459	TruSeq Adapter, Index 22 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGCT	1387	0.280694227453393	TruSeq Adapter, Index 20 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1232	0.24932609100402323	No Hit
TCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	1094	0.22139833081039076	TruSeq Adapter, Index 22 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	1022	0.2068273254919738	TruSeq Adapter, Index 22 (95% over 23bp)
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	500	0.10118753693345098	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCGG	20	7.0293766E-4	45.000004	27
GCAACGA	20	7.0293766E-4	45.000004	24
CGCGCAT	25	3.8875653E-5	45.000004	16
TATATCG	20	7.0293766E-4	45.000004	34
GTAATCG	25	3.8875653E-5	45.000004	37
ACGATTC	20	7.0293766E-4	45.000004	25
ATATCGG	20	7.0293766E-4	45.000004	35
AGCGCTA	20	7.0293766E-4	45.000004	24
GGACGTA	20	7.0293766E-4	45.000004	8
TTAGTGA	20	7.0293766E-4	45.000004	36
ACGTATA	20	7.0293766E-4	45.000004	36
CCGCGTA	25	3.8875653E-5	45.000004	25
AACTCGA	25	3.8875653E-5	45.000004	26
GTCCAAT	20	7.0293766E-4	45.000004	11
GGCGATA	20	7.0293766E-4	45.000004	8
GGTTCGA	20	7.0293766E-4	45.000004	9
CGCTTGT	20	7.0293766E-4	45.000004	40
TAATCGT	25	3.8875653E-5	45.000004	38
ACGAAAT	20	7.0293766E-4	45.000004	22
CATGCGG	45	3.8380676E-10	45.0	2