##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934210.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 494132 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.430674394696155 33.0 31.0 34.0 31.0 34.0 2 32.614878210680544 34.0 31.0 34.0 31.0 34.0 3 32.65762994503493 34.0 31.0 34.0 31.0 34.0 4 36.10471291072021 37.0 35.0 37.0 35.0 37.0 5 35.18846583504003 37.0 35.0 37.0 35.0 37.0 6 25.950806667044432 37.0 0.0 37.0 0.0 37.0 7 31.04382432224588 37.0 19.0 37.0 17.0 37.0 8 34.79330421830604 37.0 32.0 37.0 32.0 37.0 9 37.34290432516008 39.0 37.0 39.0 35.0 39.0 10 37.438601426339524 39.0 37.0 39.0 35.0 39.0 11 37.462787271417355 39.0 37.0 39.0 35.0 39.0 12 37.169466863105406 39.0 37.0 39.0 34.0 39.0 13 37.13899929573474 39.0 37.0 39.0 33.0 39.0 14 38.34382917924765 40.0 38.0 41.0 34.0 41.0 15 38.482269919778524 40.0 38.0 41.0 34.0 41.0 16 38.563802789538016 40.0 38.0 41.0 35.0 41.0 17 38.57428177086285 40.0 38.0 41.0 35.0 41.0 18 38.53397877490225 40.0 38.0 41.0 35.0 41.0 19 38.52156104036978 40.0 37.0 41.0 35.0 41.0 20 38.463916524329534 40.0 37.0 41.0 34.0 41.0 21 38.35468255445913 40.0 37.0 41.0 34.0 41.0 22 38.33192750115354 40.0 37.0 41.0 34.0 41.0 23 38.283221892125994 40.0 37.0 41.0 34.0 41.0 24 38.23327167639416 40.0 37.0 41.0 34.0 41.0 25 38.09330502780634 40.0 36.0 41.0 34.0 41.0 26 38.03330891340775 40.0 36.0 41.0 34.0 41.0 27 38.01842017922336 40.0 36.0 41.0 34.0 41.0 28 37.94094897719638 40.0 36.0 41.0 34.0 41.0 29 37.920610282272754 40.0 36.0 41.0 34.0 41.0 30 37.700316919365676 40.0 36.0 41.0 33.0 41.0 31 37.71570754373325 40.0 36.0 41.0 33.0 41.0 32 37.66216314668955 40.0 35.0 41.0 33.0 41.0 33 37.56323816308193 40.0 35.0 41.0 33.0 41.0 34 37.490120048893814 40.0 35.0 41.0 33.0 41.0 35 37.41741680360713 40.0 35.0 41.0 33.0 41.0 36 37.36224733472028 40.0 35.0 41.0 33.0 41.0 37 37.305054115094755 40.0 35.0 41.0 33.0 41.0 38 37.212060744902175 39.0 35.0 41.0 33.0 41.0 39 37.16551245416205 39.0 35.0 41.0 33.0 41.0 40 37.06560595144617 39.0 35.0 41.0 32.0 41.0 41 36.991876664534985 39.0 35.0 41.0 32.0 41.0 42 36.939048675252764 39.0 35.0 41.0 32.0 41.0 43 36.85457529566998 39.0 35.0 41.0 32.0 41.0 44 36.71753499065027 39.0 35.0 41.0 31.0 41.0 45 36.66818178138635 39.0 35.0 41.0 31.0 41.0 46 36.592596715047804 39.0 35.0 41.0 31.0 41.0 47 36.51130264787547 39.0 35.0 40.0 31.0 41.0 48 36.482955971278926 39.0 35.0 40.0 31.0 41.0 49 36.4687350748383 39.0 35.0 40.0 31.0 41.0 50 36.37587527219448 38.0 35.0 40.0 31.0 41.0 51 35.42489861008799 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 3.0 11 5.0 12 6.0 13 1.0 14 8.0 15 8.0 16 15.0 17 21.0 18 76.0 19 126.0 20 234.0 21 389.0 22 638.0 23 983.0 24 1463.0 25 2134.0 26 3111.0 27 3866.0 28 4368.0 29 5137.0 30 6494.0 31 8685.0 32 12158.0 33 20866.0 34 32615.0 35 44989.0 36 45319.0 37 75829.0 38 107717.0 39 116797.0 40 66.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.72328041899735 4.047501477338039 54.922368921664656 18.30684918199995 2 19.61237078351534 4.031311471428687 54.93208292521027 21.424234819845708 3 20.841799357256765 3.631823075615422 53.59620506261484 21.930172504512964 4 18.681445443727586 4.5463560344199525 52.57582994017793 24.196368581674534 5 17.84705301417435 8.019314677049858 49.90731221616896 24.226320092606834 6 16.500044522516248 31.369553074886873 38.63542535193025 13.494977050666623 7 84.9787101422292 2.0925582637837663 8.792387459221422 4.13634413476561 8 86.40444253762153 2.3309561007989767 6.908882646742167 4.355718714837331 9 81.2226287712595 4.1996875328859495 9.42541669027709 5.152267005577457 10 44.238786397157035 23.547554094857244 16.605481936000906 15.608177571984813 11 32.00541555697668 25.117377542842807 24.060574907109842 18.81663199307068 12 28.751426744270763 21.488994843483116 29.318886451393556 20.44069196085257 13 24.754316660325582 23.58701723426129 30.68107307359167 20.977593031821456 14 20.901702379121367 27.071713631175477 30.794807865104872 21.231776124598287 15 18.856095132474724 24.547489334833607 36.22351922158452 20.37289631110715 16 20.596925517877814 23.065294293832416 34.04535630155505 22.29242388673472 17 21.32608290902026 23.426533800684837 29.445573247634236 25.801810042660666 18 21.923089376927624 24.291282491318107 31.777338848728682 22.00828928302559 19 24.198189957339334 25.094104409348112 29.49394089028842 21.21376474302413 20 26.99825147936179 25.303967360948086 27.7808358900051 19.916945269685023 21 25.98941173613528 25.394631394040456 28.236382181279495 20.37957468854476 22 23.98448187933589 24.116632802570972 27.53272404944428 24.366161268648863 23 22.436514939327953 24.59241660123206 27.779824014635768 25.191244444804223 24 23.210397221794988 23.911019727522202 29.521261525260456 23.357321525422357 25 22.552475856653686 24.80794605490031 28.189633539216242 24.44994454922976 26 21.12127933426696 27.50257016343811 28.081565249771316 23.294585252523618 27 21.775153197930916 26.45082690455182 30.167242761043607 21.606777136473653 28 18.96274679640258 26.242582953542776 31.925275027725387 22.869395222329256 29 20.6722090453563 24.431933167655608 31.105453603490563 23.790404183497525 30 22.61440262925696 24.02192126800126 30.49185237952612 22.87182372321566 31 23.919721855698477 25.64881448681729 27.902463309399106 22.529000348085127 32 23.487246322844907 26.487861543069464 26.162847174439218 23.86204495964641 33 23.06832991994042 25.71337213538083 26.96445484202602 24.253843102652734 34 21.16337334963127 24.91055021735083 28.986586580104102 24.939489852913795 35 20.172949738126654 24.70534189244979 28.292844826888363 26.828863542535192 36 22.872633223511126 25.512211311957127 29.01674046611027 22.59841499842147 37 21.531493608995167 25.53548444545182 30.200634648231645 22.732387297321363 38 21.198586612484114 26.23064282418463 27.067868504772 25.50290205855925 39 23.21869459982353 23.812463066549018 28.02429310386698 24.94454922976047 40 23.266657492329983 23.311382383654568 29.559308039147435 23.86265208486801 41 19.568455392486218 23.68638339552994 28.782997255793997 27.962163956189844 42 20.97415265556572 23.978613002193747 27.809977900641936 27.2372564415986 43 22.032169541741883 23.055580290286805 29.09586911999223 25.816381047979082 44 21.39752131009528 23.53541159042523 28.73705811402621 26.33000898545328 45 22.212283357483425 23.79141605886686 27.960342580525044 26.03595800312467 46 22.94103599847814 24.133632308775795 29.292577691790854 23.63275400095521 47 19.851578120826012 24.636331992261177 30.94011316814131 24.571976718771502 48 19.94203977884452 22.638282887973254 30.814640622343823 26.605036710838398 49 21.134636089142173 22.09571531493609 31.782600600649218 24.98704799527252 50 20.879238745922144 22.55429723231849 29.618806310864304 26.94765771089506 51 19.72124857325573 22.790266568447297 27.8982134328479 29.59027142544907 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 93.0 1 325.0 2 557.0 3 1828.0 4 3099.0 5 2119.0 6 1139.0 7 1135.0 8 1131.0 9 1133.5 10 1136.0 11 1169.5 12 1203.0 13 1149.0 14 1095.0 15 1002.5 16 910.0 17 963.5 18 1017.0 19 1106.5 20 1196.0 21 1250.5 22 1305.0 23 1514.0 24 1723.0 25 1989.5 26 3208.5 27 4161.0 28 4887.0 29 5613.0 30 6047.5 31 6482.0 32 8240.0 33 9998.0 34 10754.5 35 11511.0 36 13132.5 37 14754.0 38 16061.5 39 17369.0 40 20558.5 41 23748.0 42 26595.0 43 29442.0 44 32940.5 45 36439.0 46 40075.0 47 43711.0 48 47999.5 49 52288.0 50 50029.5 51 47771.0 52 41804.5 53 35838.0 54 31342.0 55 26846.0 56 25398.5 57 23951.0 58 22739.0 59 21527.0 60 20466.5 61 19406.0 62 17169.0 63 14932.0 64 12390.0 65 9848.0 66 8512.5 67 7177.0 68 6051.5 69 4926.0 70 4086.5 71 3247.0 72 2768.5 73 2290.0 74 1829.5 75 1105.5 76 842.0 77 613.0 78 384.0 79 302.5 80 221.0 81 159.0 82 97.0 83 83.0 84 69.0 85 38.5 86 8.0 87 6.5 88 5.0 89 3.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 494132.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.49496242423542 #Duplication Level Percentage of deduplicated Percentage of total 1 72.19776698768428 24.904592593538737 2 10.345037597643403 7.137033664160236 3 3.8573884606043753 3.991814100126817 4 1.93016813274791 2.6632430884638323 5 1.3806148453612128 2.3812128606538314 6 1.086581299581124 2.248894865995666 7 0.9174684448189644 2.2153627670616323 8 0.7964479347365044 2.19787532652765 9 0.6600021427261688 2.049007420192865 >10 6.7080642715516685 45.18411325349816 >50 0.0916670325703534 2.062630089045437 >100 0.025854804058304794 1.7064939779553387 >500 0.0 0.0 >1k 0.002938045915716454 1.257725992779769 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC 1470 0.2974913585843459 TruSeq Adapter, Index 22 (95% over 23bp) CTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGCT 1387 0.280694227453393 TruSeq Adapter, Index 20 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1232 0.24932609100402323 No Hit TCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC 1094 0.22139833081039076 TruSeq Adapter, Index 22 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC 1022 0.2068273254919738 TruSeq Adapter, Index 22 (95% over 23bp) CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 500 0.10118753693345098 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.29263435681154026 0.0 2 0.0 0.0 0.0 1.0742068920855157 0.0 3 0.0 0.0 0.0 1.5261104320303076 0.0 4 0.0 0.0 0.0 2.0006799802481927 0.0 5 0.0 0.0 0.0 2.710206989225551 0.0 6 0.0 0.0 0.0 3.202990294091457 0.0 7 0.0 0.0 0.0 3.8277221471185836 0.0 8 0.0 0.0 0.0 4.871977528271798 0.0 9 0.0 0.0 0.0 5.37548671205265 0.0 10 0.0 0.0 0.0 6.276055790760363 0.0 11 0.0 0.0 0.0 8.007576922765576 0.0 12 0.0 0.0 0.0 9.53388972986975 0.0 13 0.0 0.0 0.0 10.039827414537006 0.0 14 0.0 0.0 0.0 10.203144099147597 0.0 15 0.0 0.0 0.0 10.44983931419135 0.0 16 0.0 0.0 0.0 11.080237669286749 0.0 17 0.0 0.0 0.0 11.97635449636939 0.0 18 0.0 0.0 0.0 12.987420365408433 0.0 19 0.0 0.0 0.0 13.668007738822824 0.0 20 0.0 0.0 0.0 14.381177499129787 0.0 21 0.0 0.0 0.0 15.33537597241223 0.0 22 0.0 0.0 0.0 16.32701383436005 0.0 23 0.0 0.0 0.0 17.28121230764249 0.0 24 0.0 0.0 0.0 18.031011956319364 0.0 25 0.0 0.0 0.0 18.654934309051022 0.0 26 0.0 0.0 0.0 19.23514364582743 0.0 27 0.0 0.0 0.0 19.763140213546176 0.0 28 0.0 0.0 0.0 20.31764791594149 0.0 29 0.0 0.0 0.0 20.903119004638437 0.0 30 0.0 0.0 0.0 21.528255607813296 0.0 31 0.0 0.0 0.0 22.158653962908698 0.0 32 0.0 0.0 0.0 22.733803922838433 0.0 33 0.0 0.0 0.0 23.343964770547142 0.0 34 2.0237507386690196E-4 0.0 0.0 23.902722349493658 0.0 35 2.0237507386690196E-4 0.0 0.0 24.488800563412205 0.0 36 2.0237507386690196E-4 0.0 0.0 25.0586887714214 0.0 37 2.0237507386690196E-4 0.0 0.0 25.640517108788746 0.0 38 2.0237507386690196E-4 0.0 0.0 26.21769081945715 0.0 39 2.0237507386690196E-4 0.0 0.0 26.769770020966057 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCCGG 20 7.0293766E-4 45.000004 27 GCAACGA 20 7.0293766E-4 45.000004 24 CGCGCAT 25 3.8875653E-5 45.000004 16 TATATCG 20 7.0293766E-4 45.000004 34 GTAATCG 25 3.8875653E-5 45.000004 37 ACGATTC 20 7.0293766E-4 45.000004 25 ATATCGG 20 7.0293766E-4 45.000004 35 AGCGCTA 20 7.0293766E-4 45.000004 24 GGACGTA 20 7.0293766E-4 45.000004 8 TTAGTGA 20 7.0293766E-4 45.000004 36 ACGTATA 20 7.0293766E-4 45.000004 36 CCGCGTA 25 3.8875653E-5 45.000004 25 AACTCGA 25 3.8875653E-5 45.000004 26 GTCCAAT 20 7.0293766E-4 45.000004 11 GGCGATA 20 7.0293766E-4 45.000004 8 GGTTCGA 20 7.0293766E-4 45.000004 9 CGCTTGT 20 7.0293766E-4 45.000004 40 TAATCGT 25 3.8875653E-5 45.000004 38 ACGAAAT 20 7.0293766E-4 45.000004 22 CATGCGG 45 3.8380676E-10 45.0 2 >>END_MODULE