##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934208.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 845831 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.225318059990705 33.0 31.0 34.0 30.0 34.0 2 32.388388460579 34.0 31.0 34.0 30.0 34.0 3 32.445510982690394 34.0 31.0 34.0 30.0 34.0 4 35.973599927172216 37.0 35.0 37.0 35.0 37.0 5 35.102046389881664 37.0 35.0 37.0 35.0 37.0 6 25.950505479226937 36.0 0.0 37.0 0.0 37.0 7 31.022071785025613 37.0 19.0 37.0 17.0 37.0 8 34.68576583265451 37.0 32.0 37.0 32.0 37.0 9 37.273950706465 39.0 37.0 39.0 35.0 39.0 10 37.2183273017896 39.0 37.0 39.0 34.0 39.0 11 37.260633625393254 39.0 37.0 39.0 34.0 39.0 12 37.1373253049368 39.0 37.0 39.0 34.0 39.0 13 37.169676921276235 39.0 37.0 39.0 34.0 39.0 14 38.35640807679076 40.0 38.0 41.0 34.0 41.0 15 38.44139313881851 40.0 38.0 41.0 34.0 41.0 16 38.535006401988106 40.0 38.0 41.0 34.0 41.0 17 38.50339252167395 40.0 38.0 41.0 34.0 41.0 18 38.49360333210772 40.0 38.0 41.0 34.0 41.0 19 38.49450776810025 40.0 38.0 41.0 34.0 41.0 20 38.41227029985895 40.0 37.0 41.0 34.0 41.0 21 38.33011677273593 40.0 37.0 41.0 34.0 41.0 22 38.3375165961049 40.0 37.0 41.0 34.0 41.0 23 38.28891114182384 40.0 37.0 41.0 34.0 41.0 24 38.239684996175356 40.0 37.0 41.0 34.0 41.0 25 38.145572815373285 40.0 37.0 41.0 34.0 41.0 26 38.108124436205344 40.0 37.0 41.0 34.0 41.0 27 38.06842146953706 40.0 37.0 41.0 34.0 41.0 28 38.053484679563645 40.0 37.0 41.0 34.0 41.0 29 38.03455536626111 40.0 37.0 41.0 34.0 41.0 30 37.78957853282748 40.0 36.0 41.0 33.0 41.0 31 37.80411926259501 40.0 36.0 41.0 33.0 41.0 32 37.72081538747102 40.0 36.0 41.0 33.0 41.0 33 37.64680060201151 40.0 36.0 41.0 33.0 41.0 34 37.580016575415186 40.0 36.0 41.0 33.0 41.0 35 37.55059225779145 40.0 36.0 41.0 33.0 41.0 36 37.48227364568099 40.0 36.0 41.0 33.0 41.0 37 37.403434019325374 40.0 36.0 41.0 33.0 41.0 38 37.32939558848044 40.0 36.0 41.0 33.0 41.0 39 37.329427509750765 40.0 36.0 41.0 33.0 41.0 40 37.24981822609954 40.0 36.0 41.0 33.0 41.0 41 37.16046349684512 39.0 36.0 41.0 32.0 41.0 42 37.15197598574656 39.0 36.0 41.0 32.0 41.0 43 37.09934963367387 39.0 35.0 41.0 32.0 41.0 44 36.99402244656439 39.0 35.0 41.0 32.0 41.0 45 36.98273413956216 39.0 35.0 41.0 32.0 41.0 46 36.8704067360974 39.0 35.0 41.0 31.0 41.0 47 36.76509137168063 39.0 35.0 41.0 31.0 41.0 48 36.771122127233454 39.0 35.0 41.0 31.0 41.0 49 36.785212412408626 39.0 35.0 41.0 31.0 41.0 50 36.70652411651973 39.0 35.0 40.0 31.0 41.0 51 35.746837134131994 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 4.0 10 3.0 11 2.0 12 5.0 13 3.0 14 5.0 15 8.0 16 17.0 17 46.0 18 84.0 19 178.0 20 336.0 21 574.0 22 1068.0 23 1603.0 24 2592.0 25 4049.0 26 5339.0 27 6317.0 28 6976.0 29 8462.0 30 10744.0 31 14931.0 32 20784.0 33 32751.0 34 49760.0 35 68277.0 36 83315.0 37 140258.0 38 195189.0 39 192066.0 40 83.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.759164655823678 4.508347412189906 55.411305568133585 14.321182363852827 2 20.036390248170143 5.865592535624729 52.39675538021189 21.70126183599324 3 19.622123095511988 5.666498390340387 52.094449127544394 22.616929386603235 4 17.63579249282658 4.216445129109716 53.938434509967124 24.20932786809658 5 17.94259136872496 7.484355621867725 51.52518647342082 23.047866535986504 6 14.632473862982085 32.01916222034898 40.62620074222865 12.722163174440285 7 81.25831283081372 1.4330285837241719 12.254575677647189 5.0540829078149185 8 82.76062239383518 2.6239284206892393 8.997542062185 5.617907123290586 9 78.4845908934527 3.4064724513525753 11.250474385545104 6.8584622696496105 10 38.87041264744376 21.179881087356694 22.200888830038153 17.7488174351614 11 25.638691417079773 26.310102136242346 26.697295322588083 21.3539111240898 12 22.743550425557824 22.314977814717125 32.158197086652066 22.783274673072988 13 22.062445098370713 25.305882617213133 33.686989481350295 18.94468280306586 14 20.347208839590888 27.069237235334242 31.727851071904432 20.85570285317043 15 17.157801026446183 26.90230081422885 35.259171158304675 20.680727001020298 16 18.705627956412098 25.01279806486166 32.51122269105767 23.770351287668575 17 18.14298601020771 26.345806668235145 30.09099926581078 25.420208055746365 18 18.982278965892714 25.03679813106874 33.36304770101829 22.61787520202026 19 20.388588264085854 27.771150501695963 30.138644717443558 21.701616516774628 20 21.949538382963027 27.27530676931917 31.083159638272896 19.69199520944491 21 20.819052505760606 28.686226917670314 30.829799333436586 19.664921243132493 22 20.02492223623868 24.85579270563505 30.099275150709776 25.020009907416497 23 18.73790390751817 26.47491047265943 29.1143266208025 25.672858999019898 24 20.120331366431355 24.870689298453236 30.309009719435682 24.699969615679727 25 18.237804005764747 26.866123374527533 29.346760759537073 25.549311860170647 26 17.871300531666492 27.621356985024192 31.235317693487236 23.27202478982208 27 17.733684388488953 27.77930815966783 30.987632281153093 23.499375170690126 28 15.709166488341051 25.95837702803515 32.745666687553424 25.586789796070374 29 16.544912636212196 25.243104118907915 32.30846351103235 25.903519733847542 30 18.422829146720797 26.90123677188469 30.02573800203587 24.650196079358643 31 18.06389219595877 28.69556684491346 26.93363094991789 26.306910009209876 32 17.06215544239925 31.153268206060076 26.403501408673836 25.38107494286684 33 17.47535855271325 27.877554736111588 25.819815069440587 28.82727164173458 34 15.916063610815872 26.96850789342079 27.66368222493619 29.45174627082715 35 15.216514882996721 27.87365324751635 28.449891290340506 28.459940579146426 36 16.689740621944573 28.166383119086436 27.68425371025654 27.45962254871245 37 15.365126130397208 29.67566807080847 27.76393865914113 27.195267139653197 38 15.157164965578229 31.407929007094797 25.497646693015508 27.937259334311467 39 16.745425504622084 26.19211166296813 28.05714143841973 29.00532139399005 40 17.881940955108053 25.561016325956366 28.078304058375725 28.47873866055985 41 15.717324146312917 27.45938609485819 26.822852319198514 30.000437439630375 42 17.92603959892697 26.63333455501158 26.997237036713006 28.44338880934844 43 18.22054287440399 25.81012046141605 28.042835980237186 27.926500683942773 44 17.52016655809494 25.33922261066336 26.838458273579473 30.302152557662225 45 18.538809762233825 24.166647947403206 26.83420210420285 30.460340186160117 46 19.41498951918291 25.557351291215387 28.027939387419 26.999719802182703 47 14.645715278820473 26.549393436750368 30.859474292145833 27.945416992283327 48 15.373520242223329 26.735955527759092 29.233499363348 28.657024866669584 49 17.687930567690234 23.671750030443434 30.225896189664365 28.414423212201967 50 17.42274757014108 23.233601038505327 27.513534027483033 31.830117363870556 51 16.556971782779303 22.828555586163194 25.381311396721095 35.23316123433641 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 106.0 1 349.5 2 593.0 3 2970.5 4 5348.0 5 3608.0 6 1868.0 7 1865.5 8 1863.0 9 1962.5 10 2062.0 11 2163.0 12 2264.0 13 2277.5 14 2291.0 15 2332.0 16 2373.0 17 2417.5 18 2462.0 19 2561.5 20 2661.0 21 3011.0 22 3361.0 23 3435.5 24 3510.0 25 4103.0 26 5395.5 27 6095.0 28 6871.5 29 7648.0 30 9908.5 31 12169.0 32 13962.5 33 15756.0 34 18219.5 35 20683.0 36 23431.5 37 26180.0 38 29721.5 39 33263.0 40 38846.5 41 44430.0 42 50960.0 43 57490.0 44 65265.0 45 73040.0 46 90724.0 47 108408.0 48 113214.5 49 118021.0 50 107621.0 51 97221.0 52 78418.5 53 59616.0 54 49200.5 55 38785.0 56 32265.5 57 25746.0 58 22310.5 59 18875.0 60 17044.5 61 15214.0 62 13333.5 63 11453.0 64 9484.0 65 7515.0 66 5928.5 67 4342.0 68 3655.5 69 2969.0 70 2488.5 71 2008.0 72 1661.0 73 1314.0 74 1233.0 75 833.5 76 515.0 77 366.5 78 218.0 79 139.5 80 61.0 81 87.0 82 113.0 83 77.0 84 41.0 85 27.0 86 13.0 87 13.5 88 14.0 89 8.5 90 3.0 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 845831.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.366541119568176 #Duplication Level Percentage of deduplicated Percentage of total 1 72.97275541176924 29.45657731937374 2 12.582499918097136 10.158240006616625 3 4.583339081120479 5.55040636448921 4 2.1741541102219855 3.5105232516221574 5 1.3406584503785326 2.7058872232250795 6 0.8871387354507081 2.1486433345999636 7 0.6138933201638095 1.7346524965994452 8 0.49078542045295664 1.5849047884479064 9 0.41428360131503406 1.5050876424881499 >10 3.7726765131304068 30.295405951857795 >50 0.10872983196343872 2.961069365729449 >100 0.05086235150181883 3.4882432257591836 >500 0.004568474685776558 1.3383503949365685 >1k 0.0036547797486212457 3.5620086342547492 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGCT 3771 0.4458337422014563 Illumina Single End Adapter 1 (95% over 21bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGC 3455 0.4084740332288601 No Hit CCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC 3230 0.3818729746249546 TruSeq Adapter, Index 16 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC 3174 0.3752522667057604 TruSeq Adapter, Index 16 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC 3148 0.37217836660042014 TruSeq Adapter, Index 16 (95% over 22bp) GAATGATACCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCG 2970 0.35113397357155274 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2286 0.27026675541567996 No Hit GAATCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTC 2191 0.2590351973384754 No Hit TCCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTG 1275 0.1507393320887979 No Hit TCTGTATCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC 1220 0.1442368510967321 No Hit CTGTCACTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGCT 1136 0.1343057892179407 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTG 1117 0.1320594776024998 No Hit CCTGTATCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC 975 0.1152712539502572 No Hit GCTGTATCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC 965 0.11408898467897251 No Hit CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 883 0.10439437665443806 No Hit TTCCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCT 849 0.10037466113207011 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.546807813854068E-4 0.0 0.0 0.46806040450160846 0.0 2 3.546807813854068E-4 0.0 0.0 1.683669669236526 0.0 3 3.546807813854068E-4 0.0 0.0 2.4094647748781965 0.0 4 3.546807813854068E-4 0.0 0.0 3.2601075155675305 0.0 5 3.546807813854068E-4 0.0 0.0 4.766318567184225 0.0 6 3.546807813854068E-4 0.0 0.0 5.636114070068371 0.0 7 3.546807813854068E-4 0.0 0.0 6.7087869799049695 0.0 8 3.546807813854068E-4 0.0 0.0 8.425914869518852 0.0 9 3.546807813854068E-4 0.0 0.0 9.05925651814606 0.0 10 3.546807813854068E-4 0.0 0.0 10.939655794124358 0.0 11 3.546807813854068E-4 0.0 0.0 14.031999300096592 0.0 12 3.546807813854068E-4 0.0 0.0 16.672479490583818 0.0 13 3.546807813854068E-4 0.0 0.0 17.562137117225546 0.0 14 3.546807813854068E-4 0.0 0.0 17.838788126706163 0.0 15 3.546807813854068E-4 0.0 0.0 18.292543073025225 0.0 16 3.546807813854068E-4 0.0 0.0 19.383659383493868 0.0 17 3.546807813854068E-4 0.0 0.0 21.02275750120296 0.0 18 3.546807813854068E-4 0.0 0.0 22.73231886748062 0.0 19 3.546807813854068E-4 0.0 0.0 23.98469670655249 0.0 20 4.729077085138757E-4 0.0 0.0 25.115182583754912 0.0 21 4.729077085138757E-4 0.0 0.0 26.947108819610538 0.0 22 4.729077085138757E-4 0.0 0.0 28.845951496220877 0.0 23 4.729077085138757E-4 0.0 0.0 30.95606569160979 0.0 24 4.729077085138757E-4 0.0 0.0 32.38767555220842 0.0 25 4.729077085138757E-4 0.0 0.0 33.62834892549457 0.0 26 4.729077085138757E-4 0.0 0.0 34.65846014156492 0.0 27 4.729077085138757E-4 0.0 0.0 35.67982256502776 0.0 28 4.729077085138757E-4 0.0 0.0 36.77046596778789 0.0 29 4.729077085138757E-4 0.0 0.0 37.909818864524944 0.0 30 5.911346356423446E-4 0.0 0.0 39.045152045739634 0.0 31 5.911346356423446E-4 0.0 0.0 40.15683984152863 0.0 32 5.911346356423446E-4 0.0 0.0 41.16957169931109 0.0 33 5.911346356423446E-4 0.0 0.0 42.205594261737865 0.0 34 5.911346356423446E-4 0.0 0.0 43.12670025099577 0.0 35 5.911346356423446E-4 0.0 0.0 44.07925460286984 0.0 36 5.911346356423446E-4 0.0 0.0 44.98546399930955 0.0 37 5.911346356423446E-4 0.0 0.0 45.88942708413383 0.0 38 5.911346356423446E-4 0.0 0.0 46.78996158807138 0.0 39 5.911346356423446E-4 0.0 0.0 47.66791474892739 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCATA 20 7.0322276E-4 45.000004 13 CTATCGT 35 1.2114106E-7 45.000004 24 AACCCGA 20 7.0322276E-4 45.000004 24 CTAAGCG 20 7.0322276E-4 45.000004 36 CGTTACC 20 7.0322276E-4 45.000004 22 AGACCGC 20 7.0322276E-4 45.000004 25 TCGACGT 20 7.0322276E-4 45.000004 26 CCGTTAG 30 2.1648193E-6 45.000004 1 TACGTTC 20 7.0322276E-4 45.000004 31 TCTATCG 40 6.8121153E-9 45.000004 23 CGCATGA 25 3.8899292E-5 45.0 20 GCACGGT 25 3.8899292E-5 45.0 19 CCGTAGG 90 0.0 45.0 2 ACGTCCA 25 3.8899292E-5 45.0 10 GCGCTAG 50 2.1827873E-11 45.0 1 CGTTTAT 670 0.0 43.656715 1 TAGGGTA 565 0.0 43.407078 5 TCTTAGG 930 0.0 43.306446 2 TAGGGCG 385 0.0 43.246754 5 TTAGGGA 1635 0.0 43.073395 4 >>END_MODULE