SRR2934202.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934202.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1689840
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13101	0.7752804999289873	No Hit
CTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGCT	3294	0.19492969748615255	Illumina PCR Primer Index 10 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	3115	0.18433697864886617	Illumina PCR Primer Index 10 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTG	2821	0.16693888178762487	Illumina PCR Primer Index 10 (95% over 22bp)
CGTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTT	2436	0.1441556597074279	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC	2198	0.13007148605785163	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCT	1958	0.11586895800785872	No Hit
GCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	1898	0.11231832599536051	Illumina PCR Primer Index 10 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	1780	0.10533541637078067	Illumina PCR Primer Index 10 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTAT	2755	44.183304	1
CGTTTTT	7300	43.089043	1
CGTTAGG	550	41.727272	2
TCGTTAG	330	40.90909	1
TTTAGGG	5930	40.82631	3
TTAGGGA	2680	40.718285	4
CTTAGGG	2910	40.051548	3
TCGAGGG	900	40.0	3
AGGGCGA	900	40.0	6
GTTTATT	3035	39.884678	2
GTTAGGG	2215	39.819412	3
TTAGGGG	5645	39.419838	4
TAGGGCG	725	39.41379	5
TAGGGAG	1705	39.325512	5
TAGGGAT	1430	39.17832	5
TCTAGGG	2760	39.048912	3
TAGGGCA	1170	38.846157	5
TTGAGGG	2665	38.836773	3
CGTTATT	365	38.835617	1
TGTAGGG	2070	38.804348	3