SRR2934201.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934201.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	675291
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2912	0.43122150302610285	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1176	0.1741471454528492	No Hit
CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	1057	0.15652511287726328	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	946	0.14008775476054028	No Hit
CTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCT	869	0.12868526309398465	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTAGG	25	3.8890903E-5	45.0	2
CCGTTAG	20	7.0312177E-4	45.0	1
TGCGTAG	40	6.8084773E-9	45.0	1
CTCGTAG	85	0.0	42.35294	1
TCGTTTG	160	0.0	42.1875	1
CGTTTTT	1295	0.0	41.872585	1
TAGGGAT	1210	0.0	41.09504	5
GCGTAGG	55	6.002665E-11	40.909092	2
TAGGGAC	810	0.0	40.833332	5
TTTCGCG	160	0.0	40.78125	1
CGTTAGG	205	0.0	40.609756	2
TTTAGGG	2675	0.0	40.542057	3
TATTGCG	50	1.0804797E-9	40.5	1
CGTTTAT	600	0.0	40.5	1
TCGCGCG	50	1.0804797E-9	40.5	1
TTAGGGA	1790	0.0	40.34916	4
TCAGGGA	810	0.0	40.277775	4
TTAGGGG	2455	0.0	40.234215	4
TCTTAGG	745	0.0	40.167786	2
GCTAGGG	785	0.0	40.12739	3