##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934200.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 512606 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26441165339462 33.0 31.0 34.0 30.0 34.0 2 32.428485035290265 34.0 31.0 34.0 31.0 34.0 3 32.47947936621889 34.0 31.0 34.0 30.0 34.0 4 35.98309617913173 37.0 35.0 37.0 35.0 37.0 5 35.05927554496046 37.0 35.0 37.0 35.0 37.0 6 25.69911589017686 36.0 0.0 37.0 0.0 37.0 7 30.906868042902346 37.0 19.0 37.0 17.0 37.0 8 34.70783993944667 37.0 32.0 37.0 32.0 37.0 9 37.26854933418649 39.0 37.0 39.0 35.0 39.0 10 37.26445652216322 39.0 37.0 39.0 34.0 39.0 11 37.30987737170459 39.0 37.0 39.0 34.0 39.0 12 37.1525694197883 39.0 37.0 39.0 34.0 39.0 13 37.17952384482429 39.0 37.0 39.0 34.0 39.0 14 38.31353515175398 40.0 38.0 41.0 34.0 41.0 15 38.438877032262596 40.0 38.0 41.0 34.0 41.0 16 38.5391216645923 40.0 38.0 41.0 35.0 41.0 17 38.523005973398675 40.0 38.0 41.0 34.0 41.0 18 38.51897363667222 40.0 38.0 41.0 35.0 41.0 19 38.51237597687113 40.0 38.0 41.0 34.0 41.0 20 38.43180922579915 40.0 37.0 41.0 34.0 41.0 21 38.326492471800954 40.0 37.0 41.0 34.0 41.0 22 38.324122230328946 40.0 37.0 41.0 34.0 41.0 23 38.26211749374763 40.0 37.0 41.0 34.0 41.0 24 38.22696378895292 40.0 37.0 41.0 34.0 41.0 25 38.12400947316262 40.0 37.0 41.0 34.0 41.0 26 38.09645224597449 40.0 37.0 41.0 34.0 41.0 27 38.08325887718833 40.0 37.0 41.0 34.0 41.0 28 38.02338638252381 40.0 37.0 41.0 34.0 41.0 29 37.99957277129023 40.0 37.0 41.0 34.0 41.0 30 37.7611303808383 40.0 36.0 41.0 33.0 41.0 31 37.78534586017331 40.0 36.0 41.0 33.0 41.0 32 37.69237777162187 40.0 36.0 41.0 33.0 41.0 33 37.62613976426339 40.0 36.0 41.0 33.0 41.0 34 37.565830286808975 40.0 36.0 41.0 33.0 41.0 35 37.550018922915456 40.0 36.0 41.0 33.0 41.0 36 37.49258494828387 40.0 36.0 41.0 33.0 41.0 37 37.418393463985986 40.0 36.0 41.0 33.0 41.0 38 37.30131328934893 40.0 36.0 41.0 33.0 41.0 39 37.30031642235947 40.0 36.0 41.0 33.0 41.0 40 37.244417739940616 40.0 36.0 41.0 32.0 41.0 41 37.15561854523747 40.0 35.0 41.0 32.0 41.0 42 37.1472007740838 40.0 35.0 41.0 32.0 41.0 43 37.093229497898975 39.0 35.0 41.0 32.0 41.0 44 36.96199420217477 39.0 35.0 41.0 32.0 41.0 45 36.94437443182483 39.0 35.0 41.0 31.0 41.0 46 36.8750151188242 39.0 35.0 41.0 31.0 41.0 47 36.798193934522814 39.0 35.0 41.0 31.0 41.0 48 36.801910239052994 39.0 35.0 41.0 31.0 41.0 49 36.80132889587715 39.0 35.0 41.0 31.0 41.0 50 36.71836069027674 39.0 35.0 41.0 31.0 41.0 51 35.72477302255533 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 5.0 11 3.0 12 3.0 13 4.0 14 4.0 15 7.0 16 13.0 17 30.0 18 62.0 19 136.0 20 221.0 21 366.0 22 647.0 23 990.0 24 1689.0 25 2583.0 26 3471.0 27 4042.0 28 4527.0 29 5394.0 30 6672.0 31 8991.0 32 12630.0 33 20037.0 34 30392.0 35 41201.0 36 48319.0 37 81884.0 38 115980.0 39 122227.0 40 72.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.468121715313515 4.290039523532694 56.640967916879625 15.600870844274159 2 20.988049301022617 4.333347639317527 53.29961022695794 21.37899283270192 3 19.590094536544637 3.985126978615155 54.69307811457532 21.731700370264882 4 19.043280804360464 4.450396600898156 52.32576286660711 24.18055972813428 5 16.58486244796198 7.908022925989941 51.95023078153591 23.556883844512157 6 14.360932177930028 31.502557519810537 41.30891952103565 12.827590781223785 7 82.5497555627519 1.4783283847633464 10.947979539841516 5.023936512643239 8 84.39425211565998 1.5852331030069877 8.667085441840323 5.35342933949271 9 79.45381052894426 4.06862190454267 10.96729261850232 5.510274948010753 10 37.93049632661342 28.779413428637202 18.839030366402266 14.451059878347113 11 25.174500493556458 25.144457926750757 29.67425273992111 20.006788839771676 12 24.307362769846627 23.514941299945768 32.60867020674748 19.569025723460122 13 22.51339235202085 26.068364396827192 33.446935853267426 17.971307397884534 14 18.899505663218925 28.779608510239836 31.57707869201687 20.743807134524374 15 15.917683366952396 27.556641943324895 36.27952072351865 20.246153966204066 16 18.861854913910488 25.656742215268647 32.928213871862596 22.553188998958266 17 18.395609883614316 25.73262895869342 29.861531078450117 26.01023007924215 18 19.629110857071513 24.720740685828883 33.168164243102886 22.481984213996714 19 21.586754739507537 27.948170719812097 29.711903489229545 20.75317105145082 20 23.33878261276692 27.223832729230637 30.316851538998762 19.12053311900368 21 21.924245912065015 28.554289259197123 30.65102632431146 18.870438504426403 22 20.53487473810295 26.16219864769433 29.120416070042097 24.182510544160625 23 18.3801984370062 27.28606376047101 29.262630558362563 25.071107244160235 24 20.234449070046 25.344806732656274 31.064599321896345 23.35614487540138 25 18.245592131188477 27.89627901351135 28.13876544558589 25.719363409714287 26 17.468191944690464 29.11514886677097 28.794239630437414 24.622419558101154 27 18.09303831792839 27.42379137193088 31.336738157571315 23.14643215256942 28 16.110423990355166 25.634307830965692 32.604768574694795 25.650499603984343 29 16.59364112008053 24.72054560422625 31.827173306594148 26.858639969099073 30 18.588155425414453 25.569345657288444 31.004904351490225 24.837594565806878 31 18.46935072941011 28.131352344685784 28.49010741193041 24.909189513973693 32 18.30489693838933 29.506872724860813 27.356683300624653 24.83154703612521 33 18.492565440123602 27.17486724696941 28.02659352407112 26.305973788835868 34 15.78034591869779 26.258178796190446 30.024619298252457 27.936855986859303 35 15.58623972407658 26.435898136190367 28.415000994916173 29.56286114481688 36 17.818168339816545 26.649902654280282 28.613008821590068 26.9189201843131 37 16.820521023944316 27.238073686222947 31.01134204437716 24.930063245455575 38 16.429577492265015 30.34923508503607 27.28411294444466 25.937074478254253 39 18.27875600363632 26.83308427915397 29.04979652988845 25.838363187321256 40 19.4032063612209 25.06974167294179 30.26183852705587 25.26521343878144 41 16.092671564515438 26.542217609626107 29.444251530415173 27.920859295443286 42 18.03197777630383 25.602314448133654 27.65886470310531 28.70684307245721 43 18.870048341221132 24.815940507914462 28.869150965849016 27.44486018501539 44 17.81134048372434 25.583001369472854 27.171355778121985 29.43430236868082 45 18.352887012637385 24.395929817442635 26.64970757267765 30.601475597242327 46 18.52572931257145 25.203957815554247 29.543548066156074 26.726764805718233 47 15.16857001283637 26.03656609559779 32.191585740315176 26.60327815125067 48 15.831652380190633 24.649340819264697 31.298892326660244 28.22011447388443 49 17.993741782187488 22.440626914238226 31.278018595178363 28.28761270839592 50 17.42351825768719 23.047915943239055 30.035153704794716 29.493412094279037 51 15.741329598170914 23.624577160626288 27.617117240141553 33.016976001061245 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 52.0 1 189.0 2 326.0 3 1864.5 4 3403.0 5 2263.0 6 1123.0 7 1125.0 8 1127.0 9 1198.0 10 1269.0 11 1276.0 12 1283.0 13 1384.0 14 1485.0 15 1461.0 16 1437.0 17 1422.5 18 1408.0 19 1519.0 20 1630.0 21 1858.5 22 2087.0 23 2268.0 24 2449.0 25 2873.0 26 4013.0 27 4729.0 28 5522.5 29 6316.0 30 7307.0 31 8298.0 32 9846.5 33 11395.0 34 13751.5 35 16108.0 36 16932.5 37 17757.0 38 19753.0 39 21749.0 40 24452.0 41 27155.0 42 31384.0 43 35613.0 44 38959.0 45 42305.0 46 49696.5 47 57088.0 48 63817.0 49 70546.0 50 64636.5 51 58727.0 52 47285.5 53 35844.0 54 29336.0 55 22828.0 56 19074.0 57 15320.0 58 13773.5 59 12227.0 60 10422.5 61 8618.0 62 7737.0 63 6856.0 64 5661.5 65 4467.0 66 3336.5 67 2206.0 68 1842.5 69 1479.0 70 1307.0 71 1135.0 72 826.0 73 517.0 74 507.5 75 328.0 76 158.0 77 125.0 78 92.0 79 84.0 80 76.0 81 85.0 82 94.0 83 56.5 84 19.0 85 13.5 86 8.0 87 4.5 88 1.0 89 0.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 512606.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.06774257826633 #Duplication Level Percentage of deduplicated Percentage of total 1 73.33267892547106 29.382749017604308 2 11.755179279116632 9.420069946340313 3 4.177036166206956 5.020932295430665 4 2.069088774732409 3.3161486559023463 5 1.3348175278703207 2.674156254783293 6 0.9357151751796189 2.2495196859404616 7 0.7483312628500214 2.098876108220053 8 0.5918628398260016 1.8971686326231936 9 0.5344435889080602 1.9272553328675661 >10 4.374028123622421 33.48082154397861 >50 0.09854929417272901 2.715098251490042 >100 0.042235411788285694 2.8184480625011066 >500 0.003519617649023808 0.9869604759251551 >1k 0.0025140126064455773 2.011795736392856 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC 2260 0.4408844219537032 TruSeq Adapter, Index 23 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC 2227 0.4344467290667686 TruSeq Adapter, Index 23 (95% over 22bp) CTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGCT 2223 0.4336664026562311 TruSeq Adapter, Index 20 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC 1666 0.3250059499888803 TruSeq Adapter, Index 23 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1610 0.31408138024135496 No Hit TCCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTG 859 0.1675750966629341 TruSeq Adapter, Index 20 (95% over 21bp) GCTGTATCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC 775 0.15118824204164602 TruSeq Adapter, Index 20 (95% over 22bp) TCTGTATCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC 759 0.14806693639949592 TruSeq Adapter, Index 20 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTG 672 0.13109483697030466 TruSeq Adapter, Index 20 (95% over 21bp) CTGTCACTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGCT 622 0.12134075683858558 TruSeq Adapter, Index 20 (95% over 23bp) CCTGTATCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC 610 0.11899977760697299 TruSeq Adapter, Index 20 (95% over 22bp) CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 602 0.11743912478589794 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.9508160263438196E-4 0.0 0.0 0.45493029734337875 0.0 2 1.9508160263438196E-4 0.0 0.0 1.7455901803724498 0.0 3 1.9508160263438196E-4 0.0 0.0 2.516357592380893 0.0 4 1.9508160263438196E-4 0.0 0.0 3.267226680920629 0.0 5 1.9508160263438196E-4 0.0 0.0 4.51204238733062 0.0 6 1.9508160263438196E-4 0.0 0.0 5.328458894355509 0.0 7 1.9508160263438196E-4 0.0 0.0 6.29235709297199 0.0 8 1.9508160263438196E-4 0.0 0.0 7.872518074310484 0.0 9 1.9508160263438196E-4 0.0 0.0 8.50672836447486 0.0 10 1.9508160263438196E-4 0.0 0.0 9.839330792070323 0.0 11 1.9508160263438196E-4 0.0 0.0 12.670745172705743 0.0 12 1.9508160263438196E-4 0.0 0.0 14.844734552463295 0.0 13 1.9508160263438196E-4 0.0 0.0 15.581362684010722 0.0 14 1.9508160263438196E-4 0.0 0.0 15.833408114614343 0.0 15 1.9508160263438196E-4 0.0 0.0 16.145148515624086 0.0 16 1.9508160263438196E-4 0.0 0.0 17.110217203856372 0.0 17 1.9508160263438196E-4 0.0 0.0 18.59966523996988 0.0 18 1.9508160263438196E-4 0.0 0.0 20.19348193349278 0.0 19 1.9508160263438196E-4 0.0 0.0 21.202639063920437 0.0 20 1.9508160263438196E-4 0.0 0.0 22.17648642427127 0.0 21 1.9508160263438196E-4 0.0 0.0 23.658716441087307 0.0 22 1.9508160263438196E-4 0.0 0.0 25.14094645790334 0.0 23 1.9508160263438196E-4 0.0 0.0 26.776705695992632 0.0 24 1.9508160263438196E-4 0.0 0.0 28.012742730284078 0.0 25 1.9508160263438196E-4 0.0 0.0 29.001416292435124 0.0 26 1.9508160263438196E-4 0.0 0.0 29.848070447868345 0.0 27 1.9508160263438196E-4 0.0 0.0 30.678532830282908 0.0 28 1.9508160263438196E-4 0.0 0.0 31.548791859634886 0.0 29 1.9508160263438196E-4 0.0 0.0 32.547414583520286 0.0 30 1.9508160263438196E-4 0.0 0.0 33.54369632817408 0.0 31 1.9508160263438196E-4 0.0 0.0 34.48906177454029 0.0 32 1.9508160263438196E-4 0.0 0.0 35.32440119702071 0.0 33 1.9508160263438196E-4 0.0 0.0 36.13028329750335 0.0 34 1.9508160263438196E-4 0.0 0.0 36.957429292673126 0.0 35 1.9508160263438196E-4 0.0 0.0 37.8395882997858 0.0 36 1.9508160263438196E-4 0.0 0.0 38.64683597148687 0.0 37 1.9508160263438196E-4 0.0 0.0 39.45876560165117 0.0 38 1.9508160263438196E-4 0.0 0.0 40.25684443802843 0.0 39 1.9508160263438196E-4 0.0 0.0 41.09998712461422 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCCCGG 30 2.1631404E-6 45.000004 25 ACACCCG 60 0.0 45.000004 13 ATCCGGC 30 2.1631404E-6 45.000004 13 CTGTTCG 30 2.1631404E-6 45.000004 1 CACGTGA 30 2.1631404E-6 45.000004 43 TAGTGGT 30 2.1631404E-6 45.000004 15 CGCCGGT 30 2.1631404E-6 45.000004 28 TCCGGAC 25 3.887771E-5 45.0 18 CTCGTTG 25 3.887771E-5 45.0 1 GTCGATT 25 3.887771E-5 45.0 13 CGACGAA 20 7.029625E-4 45.0 18 CGTGCAC 25 3.887771E-5 45.0 16 GGCACGT 25 3.887771E-5 45.0 11 GGGTACG 40 6.8030204E-9 45.0 7 GCCGGTC 20 7.029625E-4 45.0 9 CCGTAGG 20 7.029625E-4 45.0 2 ACCTACG 20 7.029625E-4 45.0 33 CGCTCCC 20 7.029625E-4 45.0 24 GCTTCGT 20 7.029625E-4 45.0 22 AGGCACG 35 1.2101737E-7 45.0 10 >>END_MODULE