SRR2934197.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934197.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1667279
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7629	0.45757188808831634	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	3201	0.19198946307126763	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	2628	0.1576220896442647	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	2015	0.12085559765342213	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1942	0.11647720627441478	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTAT	1310	43.110687	1
TTTAGGG	5990	41.281303	3
GTTAGGG	2440	40.942623	3
CGTTTTT	3640	40.858517	1
CGTTAGG	665	40.26316	2
TTAGGGG	6370	40.16091	4
TCGTTAG	370	40.135136	1
TTAGGGA	2485	40.020123	4
TCGTTTG	360	40.0	1
CTTTAGG	1660	39.8494	2
TAGGGGG	5505	39.68665	5
TTTTAGG	3480	39.63362	2
TGTTAGG	1620	39.444443	2
TTAGGGT	1110	39.324326	4
TAGGGAT	1285	39.221786	5
CTTAGGG	3025	39.198345	3
TAGGGGA	3015	39.02985	5
TGTAGGG	2085	38.956837	3
AGGGGGG	6485	38.68543	6
TAGGGCA	890	38.679775	5