##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934197.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1667279 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.34425252162355 33.0 31.0 34.0 31.0 34.0 2 32.52089962147907 34.0 31.0 34.0 31.0 34.0 3 32.55677364136416 34.0 31.0 34.0 31.0 34.0 4 36.03927597000862 37.0 35.0 37.0 35.0 37.0 5 35.14476521326065 37.0 35.0 37.0 35.0 37.0 6 25.986752667070117 37.0 0.0 37.0 0.0 37.0 7 31.046670653202014 37.0 19.0 37.0 17.0 37.0 8 34.76056017019347 37.0 32.0 37.0 32.0 37.0 9 37.29660782628462 39.0 37.0 39.0 35.0 39.0 10 37.39213472970031 39.0 37.0 39.0 35.0 39.0 11 37.40357312723305 39.0 37.0 39.0 35.0 39.0 12 36.98395049658755 39.0 35.0 39.0 33.0 39.0 13 36.94571454447636 39.0 35.0 39.0 33.0 39.0 14 37.81261864391023 40.0 37.0 41.0 33.0 41.0 15 38.02266207395403 40.0 37.0 41.0 33.0 41.0 16 38.1906369599809 40.0 37.0 41.0 33.0 41.0 17 38.18843636847822 40.0 37.0 41.0 33.0 41.0 18 38.156579672628276 40.0 37.0 41.0 34.0 41.0 19 38.14770353372171 40.0 37.0 41.0 34.0 41.0 20 38.04854556435966 40.0 36.0 41.0 33.0 41.0 21 37.952296526256255 40.0 36.0 41.0 33.0 41.0 22 37.99111786329703 40.0 36.0 41.0 34.0 41.0 23 37.95175972347759 40.0 35.0 41.0 34.0 41.0 24 37.89408971144002 40.0 35.0 41.0 34.0 41.0 25 37.7772874246002 40.0 35.0 41.0 34.0 41.0 26 37.745353956956215 40.0 35.0 41.0 34.0 41.0 27 37.723147115749676 40.0 35.0 41.0 34.0 41.0 28 37.63513785035378 39.0 35.0 41.0 33.0 41.0 29 37.5976474243363 39.0 35.0 41.0 33.0 41.0 30 37.331318873445895 39.0 35.0 41.0 33.0 41.0 31 37.300070953931524 39.0 35.0 41.0 33.0 41.0 32 37.23579436914878 39.0 35.0 41.0 33.0 41.0 33 37.12919433400169 39.0 35.0 41.0 32.0 41.0 34 36.941607253495064 39.0 35.0 41.0 31.0 41.0 35 36.87108696264992 39.0 35.0 41.0 31.0 41.0 36 36.81110180119824 39.0 35.0 41.0 31.0 41.0 37 36.74820710870826 39.0 35.0 41.0 31.0 41.0 38 36.67068139165671 39.0 35.0 41.0 31.0 41.0 39 36.61709767831299 39.0 35.0 41.0 31.0 41.0 40 36.516476246626986 39.0 35.0 41.0 31.0 41.0 41 36.3737472852474 39.0 35.0 41.0 31.0 41.0 42 36.32816103363624 39.0 35.0 41.0 31.0 41.0 43 36.26674059950374 39.0 35.0 40.0 31.0 41.0 44 36.1513202049567 38.0 35.0 40.0 30.0 41.0 45 36.116702123639776 38.0 35.0 40.0 30.0 41.0 46 36.06729887439355 38.0 35.0 40.0 30.0 41.0 47 35.97936158255457 38.0 35.0 40.0 30.0 41.0 48 35.92232493781785 38.0 35.0 40.0 30.0 41.0 49 35.89414189226878 38.0 35.0 40.0 30.0 41.0 50 35.792173955288824 38.0 35.0 40.0 30.0 41.0 51 34.76909203558613 36.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 4.0 10 15.0 11 12.0 12 11.0 13 17.0 14 24.0 15 55.0 16 118.0 17 207.0 18 369.0 19 663.0 20 1142.0 21 1942.0 22 2772.0 23 4524.0 24 7163.0 25 10514.0 26 14337.0 27 16905.0 28 19099.0 29 22311.0 30 27248.0 31 36522.0 32 51658.0 33 86987.0 34 127175.0 35 137375.0 36 154461.0 37 250723.0 38 338813.0 39 353956.0 40 154.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.364415913593344 4.205294974626322 54.602379085923836 17.8279100258565 2 21.9662096145876 4.032258548209388 52.60961122883453 21.391920608368487 3 21.042668923437528 4.230125851762063 52.58262114499133 22.14458407980908 4 18.986744270155146 4.811132389959929 51.63412962077732 24.5679937191076 5 18.011562551918423 7.9947027462110425 49.64831920752316 24.345415494347378 6 16.249949768455068 31.03385816051183 39.337747311637706 13.378444759395396 7 83.33494274203657 2.076497094967309 10.232180696811993 4.356379466184124 8 85.15047571522223 2.1854170777656288 8.495458768448472 4.168648438563672 9 79.90624244652514 3.981637146512371 10.715783021317968 5.396337385644514 10 45.53371091460997 21.54294512196219 17.688401281369227 15.23494268205861 11 34.492367504178965 22.35084829833519 24.91190736523401 18.24487683225183 12 30.74968256662502 19.98993569762469 29.196073362646562 20.064308373103724 13 28.087140784475785 19.25802460176131 32.186334740616296 20.468499873146605 14 21.47307079379036 20.89440339619224 35.82891645609403 21.803609353923367 15 20.48517374716529 20.989648403176673 37.230721432945536 21.2944564167125 16 26.918770043885875 21.35341475541886 31.520819251007183 20.206995949688082 17 26.59135033788586 21.877742117546013 29.84653438326759 21.684373161300538 18 26.66602290318537 21.342438787989295 31.21349216297932 20.778046145846016 19 26.051488683057844 24.312007768345907 29.178379863238245 20.458123685357997 20 25.273634466696937 28.00491099570018 28.05427286015118 18.667181677451705 21 25.55882968597337 25.496992404990404 30.530643041746465 18.41353486728976 22 23.668144323775444 21.97982461243739 32.666698255061085 21.685332808726073 23 22.632024994017197 23.142077600689507 31.626200533923836 22.59969687136946 24 23.338805322924358 24.23991425550253 29.72291979926575 22.698360622307366 25 24.99677618442984 23.77628459304052 26.904075442682355 24.322863779847285 26 22.164436785924853 23.537332384082088 28.62370365127852 25.67452717871454 27 21.13467512036078 22.582723107530292 31.83546365065475 24.447138121454177 28 19.818878544022926 23.80291480909914 30.11043742528995 26.26776922158799 29 22.479141163536518 24.67919286454157 28.968277055009988 23.873388916911928 30 25.649756279542895 21.745070860965683 29.89979481538483 22.705378044106595 31 25.063231768648198 22.52520423996224 29.95749361684517 22.454070374544393 32 27.563353224025494 21.887098679944987 28.227729132316785 22.32181896371273 33 26.676818936722647 21.17749938672532 28.145679277433473 24.000002399118564 34 22.77273329778639 21.413932521191715 32.356912070505295 23.456422110516595 35 22.5228051213984 24.240514035143487 29.9945000206924 23.242180822765715 36 24.2298979354985 24.294074357081207 28.350324090928993 23.1257036164913 37 22.091083735835454 24.78121538146885 30.536101036479195 22.5915998462165 38 23.667664500062678 23.468057835551217 30.39587255642277 22.468405107963335 39 22.503132349174912 21.606041940191172 29.950836062830515 25.939989647803397 40 24.62395315960916 20.70931139899201 30.84348810247115 23.82324733892768 41 23.012825088062648 21.618157488938564 29.380025778528967 25.988991644469824 42 22.27725533638941 21.806188406379494 31.374413040648864 24.542143216582225 43 21.436064389943134 20.740080094573255 32.52131167009241 25.302543845391202 44 22.372680277266134 20.935848169382567 30.169275808068114 26.522195745283184 45 22.51302871325075 20.45572456679416 28.56894377005888 28.462302949896205 46 22.43859605980763 21.22998010530931 30.294029973387776 26.03739386149529 47 20.239324072335823 22.24522710356215 32.6022219436579 24.913226880444125 48 20.16759042727702 23.29286220242683 32.07291641051078 24.466630959785373 49 23.5895132128456 20.346984517888128 31.80151612297642 24.261986146289853 50 21.328823790139502 21.024975424029215 30.411526805051825 27.234673980779462 51 20.296003248406535 21.112603229573455 29.754288274487955 28.837105247532058 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 325.0 1 1085.0 2 1845.0 3 9657.0 4 17469.0 5 11247.5 6 5026.0 7 4897.0 8 4768.0 9 4820.5 10 4873.0 11 4681.5 12 4490.0 13 4511.5 14 4533.0 15 4312.5 16 4092.0 17 4007.5 18 3923.0 19 3936.5 20 3950.0 21 4226.5 22 4503.0 23 5468.5 24 6434.0 25 7342.5 26 9311.5 27 10372.0 28 13269.0 29 16166.0 30 18536.0 31 20906.0 32 23797.0 33 26688.0 34 29777.0 35 32866.0 36 37172.0 37 41478.0 38 45462.0 39 49446.0 40 55394.5 41 61343.0 42 67996.5 43 74650.0 44 85397.5 45 96145.0 46 113564.0 47 130983.0 48 150918.0 49 170853.0 50 172574.0 51 174295.0 52 157805.5 53 141316.0 54 128283.5 55 115251.0 56 107395.0 57 99539.0 58 93501.5 59 87464.0 60 78152.0 61 68840.0 62 61595.5 63 54351.0 64 46554.0 65 38757.0 66 33382.0 67 28007.0 68 24066.0 69 20125.0 70 16401.5 71 12678.0 72 10763.5 73 8849.0 74 7029.0 75 4063.5 76 2918.0 77 2348.5 78 1779.0 79 1301.5 80 824.0 81 628.0 82 432.0 83 282.5 84 133.0 85 101.5 86 70.0 87 52.5 88 35.0 89 25.5 90 16.0 91 13.5 92 11.0 93 6.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1667279.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.016421699775776 #Duplication Level Percentage of deduplicated Percentage of total 1 72.86266720044894 26.2425254806179 2 10.586088564438814 7.625460597760046 3 3.7696136339161233 4.073039828530418 4 1.9333067777889643 2.785231687355282 5 1.2125888866237147 2.1836556344550653 6 0.9234441484275451 1.9955492319574077 7 0.7700196361301557 1.941334635238011 8 0.6660290284828788 1.9190385883305068 9 0.5830533504641218 1.8899545809404668 >10 6.542532416219624 42.0279785216121 >50 0.10149933928388023 2.553420644832683 >100 0.0454943434792187 2.7832310820839252 >500 0.0021204956450866404 0.5167652257445255 >1k 0.0013494063196005895 0.9331351113806828 >5k 1.927723313715128E-4 0.5296791491609546 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7629 0.45757188808831634 No Hit CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT 3201 0.19198946307126763 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 2628 0.1576220896442647 No Hit TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 2015 0.12085559765342213 No Hit GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 1942 0.11647720627441478 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.799338922879734E-4 0.0 0.0 0.20176587121891418 0.0 2 1.799338922879734E-4 0.0 0.0 0.6321677415717465 0.0 3 1.799338922879734E-4 0.0 0.0 0.9435733311581325 0.0 4 1.799338922879734E-4 0.0 0.0 1.3125577662766699 0.0 5 1.799338922879734E-4 0.0 0.0 1.9982258518220406 0.0 6 1.799338922879734E-4 0.0 0.0 2.740333201581739 0.0 7 1.799338922879734E-4 0.0 0.0 3.6387431257755902 0.0 8 1.799338922879734E-4 0.0 0.0 4.990586458535134 0.0 9 1.799338922879734E-4 0.0 0.0 5.880599467755546 0.0 10 1.799338922879734E-4 0.0 0.0 7.108228436872293 0.0 11 1.799338922879734E-4 0.0 0.0 9.028003111656778 0.0 12 1.799338922879734E-4 0.0 0.0 10.596186960910561 0.0 13 1.799338922879734E-4 0.0 0.0 11.128311458370195 0.0 14 1.799338922879734E-4 0.0 0.0 11.408528506626665 0.0 15 1.799338922879734E-4 0.0 0.0 11.67986881619693 0.0 16 2.3991185638396454E-4 0.0 0.0 12.225728267434544 0.0 17 2.3991185638396454E-4 0.0 0.0 12.922432298373577 0.0 18 2.3991185638396454E-4 0.0 0.0 13.648105685970974 0.0 19 2.3991185638396454E-4 0.0 0.0 14.254063057232774 0.0 20 3.598677845759468E-4 0.0 0.0 14.932773698943008 0.0 21 3.598677845759468E-4 0.0 0.0 15.846058158232665 0.0 22 3.598677845759468E-4 0.0 0.0 16.815242080059786 0.0 23 3.598677845759468E-4 0.0 0.0 17.668068751540684 0.0 24 3.598677845759468E-4 0.0 0.0 18.37071060092522 0.0 25 3.598677845759468E-4 0.0 0.0 19.01451406753159 0.0 26 3.598677845759468E-4 0.0 0.0 19.580166246920882 0.0 27 3.598677845759468E-4 0.0 0.0 20.18180520476777 0.0 28 4.1984574867193794E-4 0.0 0.0 20.758733241407107 0.0 29 4.1984574867193794E-4 0.0 0.0 21.413752587299427 0.0 30 4.1984574867193794E-4 0.0 0.0 22.1921466053372 0.0 31 4.798237127679291E-4 0.0 0.0 22.809079944028564 0.0 32 4.798237127679291E-4 0.0 0.0 23.423074362479227 0.0 33 4.798237127679291E-4 0.0 0.0 24.045345739975133 0.0 34 4.798237127679291E-4 0.0 0.0 24.7280749052798 0.0 35 4.798237127679291E-4 0.0 0.0 25.456807169046094 0.0 36 4.798237127679291E-4 0.0 0.0 26.090294425827953 0.0 37 4.798237127679291E-4 0.0 0.0 26.738956107526096 0.0 38 4.798237127679291E-4 0.0 0.0 27.585485092776914 0.0 39 5.398016768639202E-4 0.0 0.0 29.14677147615966 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTAT 1310 0.0 43.110687 1 TTTAGGG 5990 0.0 41.281303 3 GTTAGGG 2440 0.0 40.942623 3 CGTTTTT 3640 0.0 40.858517 1 CGTTAGG 665 0.0 40.26316 2 TTAGGGG 6370 0.0 40.16091 4 TCGTTAG 370 0.0 40.135136 1 TTAGGGA 2485 0.0 40.020123 4 TCGTTTG 360 0.0 40.0 1 CTTTAGG 1660 0.0 39.8494 2 TAGGGGG 5505 0.0 39.68665 5 TTTTAGG 3480 0.0 39.63362 2 TGTTAGG 1620 0.0 39.444443 2 TTAGGGT 1110 0.0 39.324326 4 TAGGGAT 1285 0.0 39.221786 5 CTTAGGG 3025 0.0 39.198345 3 TAGGGGA 3015 0.0 39.02985 5 TGTAGGG 2085 0.0 38.956837 3 AGGGGGG 6485 0.0 38.68543 6 TAGGGCA 890 0.0 38.679775 5 >>END_MODULE