SRR2934195.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934195.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1354209
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16638	1.2286138993316393	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6445	0.4759235834350532	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTT	2138	0.15787814140948703	No Hit
CGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTG	1960	0.1447339369329254	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT	1819	0.13432195473519967	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC	1771	0.13077745015725048	No Hit
CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT	1577	0.11645174415470581	TruSeq Adapter, Index 15 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	1572	0.1160825249278361	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1386	0.10234756968828297	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTTAG	60	45.000004	1
CGTTTAT	3595	44.18637	1
TCGTTAG	225	44.0	1
CGTTTTT	8600	43.639534	1
CGTTAGG	375	42.6	2
GTTTATT	3810	41.811028	2
CACGACC	465	40.64516	27
TTTAGGG	4430	40.174946	3
TTAGGGA	2225	40.146065	4
CGTTATT	400	39.9375	1
TCAAGCG	485	39.896908	17
TAGGGAC	910	39.80769	5
ACGACCA	475	39.789474	28
GTTAGGG	1660	39.713856	3
TTGTTAG	720	39.6875	1
AGGGCGA	760	39.671055	6
TTAGGGG	4570	39.28884	4
TAGGGAT	1225	39.122448	5
TGTAGGG	1785	38.949577	3
CTTAGGG	2245	38.886414	3