##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934180.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 343823 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.593226747483442 31.0 31.0 34.0 30.0 34.0 2 31.603944471428612 31.0 31.0 34.0 30.0 34.0 3 31.708428464646055 31.0 31.0 34.0 30.0 34.0 4 35.50104559613522 37.0 35.0 37.0 33.0 37.0 5 30.37293316619307 35.0 35.0 37.0 0.0 37.0 6 24.599506141241278 35.0 17.0 37.0 0.0 37.0 7 30.66377176628672 35.0 26.0 37.0 17.0 37.0 8 33.355255465748364 35.0 32.0 37.0 28.0 37.0 9 36.47370303906371 37.0 35.0 39.0 32.0 39.0 10 36.77611736271279 38.0 35.0 39.0 33.0 39.0 11 36.95936281167926 39.0 37.0 39.0 33.0 39.0 12 36.92116001547308 39.0 35.0 39.0 33.0 39.0 13 36.67430625641682 39.0 35.0 39.0 32.0 39.0 14 37.741343656474406 40.0 36.0 41.0 33.0 41.0 15 37.4591693982078 40.0 36.0 41.0 32.0 41.0 16 37.943223693586525 40.0 36.0 41.0 33.0 41.0 17 37.79279163988448 40.0 36.0 41.0 33.0 41.0 18 37.90627735782655 40.0 36.0 41.0 33.0 41.0 19 37.940576982924355 40.0 37.0 41.0 33.0 41.0 20 37.59283701206726 40.0 36.0 41.0 32.0 41.0 21 37.73332499571 39.0 36.0 41.0 33.0 41.0 22 37.8227460059391 39.0 36.0 41.0 33.0 41.0 23 37.59808680629277 39.0 36.0 41.0 33.0 41.0 24 37.58712186212092 39.0 36.0 41.0 33.0 41.0 25 37.462842799929035 39.0 36.0 41.0 33.0 41.0 26 37.32631033991327 39.0 35.0 41.0 32.0 41.0 27 36.39628529795854 39.0 35.0 40.0 30.0 41.0 28 36.82668989567306 39.0 35.0 40.0 31.0 41.0 29 37.06071147072767 39.0 35.0 40.0 31.0 41.0 30 37.13376359347688 39.0 35.0 40.0 32.0 41.0 31 37.29783638674551 39.0 35.0 40.0 32.0 41.0 32 36.969059661511885 39.0 35.0 40.0 31.0 41.0 33 36.001887599142584 39.0 35.0 40.0 30.0 41.0 34 36.22766074404563 39.0 35.0 40.0 30.0 41.0 35 36.48280946882553 39.0 35.0 40.0 30.0 41.0 36 36.574208240868124 39.0 35.0 40.0 30.0 41.0 37 36.49659563205486 39.0 35.0 40.0 31.0 41.0 38 36.56395296417052 39.0 35.0 40.0 31.0 41.0 39 36.65376080134255 39.0 35.0 40.0 31.0 41.0 40 36.56687888826518 39.0 35.0 40.0 31.0 41.0 41 36.51196691320825 39.0 35.0 40.0 30.0 41.0 42 36.52642493375952 39.0 35.0 40.0 31.0 41.0 43 36.34061130290876 39.0 35.0 40.0 31.0 41.0 44 36.418119206684835 39.0 35.0 40.0 31.0 41.0 45 36.45976854369836 39.0 35.0 40.0 31.0 41.0 46 36.39989180479491 39.0 35.0 40.0 31.0 41.0 47 36.1705703225206 38.0 35.0 40.0 31.0 41.0 48 36.23764262425725 39.0 35.0 40.0 31.0 41.0 49 36.383200076783694 39.0 35.0 40.0 31.0 41.0 50 36.22176526875747 39.0 35.0 40.0 31.0 41.0 51 35.521628861361805 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 4.0 10 4.0 11 3.0 12 4.0 13 3.0 14 0.0 15 5.0 16 9.0 17 21.0 18 36.0 19 145.0 20 398.0 21 839.0 22 1547.0 23 2008.0 24 2348.0 25 2482.0 26 2520.0 27 2684.0 28 3122.0 29 4300.0 30 6211.0 31 9061.0 32 12714.0 33 19466.0 34 26210.0 35 34232.0 36 40943.0 37 57090.0 38 64300.0 39 51087.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.88651137358467 3.903171108390073 40.58192732888725 15.628390189138017 2 16.190598069355453 23.831448157918462 41.42480287822513 18.55315089450095 3 16.99711770300416 24.075759911349735 41.90266503404368 17.024457351602422 4 16.267381763290995 3.362485930260628 60.15682487791684 20.21330742853154 5 26.56657640704665 18.528138024506795 35.482501170660484 19.42278439778607 6 13.095400831241658 39.027348374018025 34.49100263798524 13.386248156755073 7 66.04415644095944 1.8367008606172364 26.01163970996705 6.10750298845627 8 62.770669792305924 16.28308751886872 11.99977895603261 8.946463732792745 9 59.27439409230912 4.479921354883181 12.92380090918874 23.321883643618953 10 42.05768665854233 19.948636362314332 20.919775582203634 17.073901396939707 11 33.425628884629596 19.784598470724763 26.54127268972698 20.248499954918664 12 24.594922387391186 17.005843122769566 31.0761641891322 27.323070300707048 13 24.321525901408574 22.14656960121923 37.06238384284937 16.46952065452282 14 18.61946408471801 32.21134130061107 26.240536555146104 22.928658059524814 15 12.56809463008583 21.774285024562058 42.58237523376854 23.075245111583577 16 13.674477856338871 23.188384721208298 29.58760757715452 33.54952984529831 17 14.200620668192645 26.283581959322095 32.92973419462921 26.58606317785605 18 15.315147619560065 22.35568882826338 33.210692711075176 29.11847084110138 19 17.51540763706907 24.713878943526176 28.8869563699927 28.88375704941205 20 21.998819159858414 23.545836084264288 36.68689994561155 17.768444810265745 21 20.895053559534993 31.357995247554697 28.152566873071315 19.594384319838987 22 16.840932689203456 21.603266797160167 33.63125794376758 27.924542569868798 23 19.56733551856624 29.261567725253983 27.173283928067637 23.99781282811214 24 21.650674911218854 22.647408695753338 27.31783504884781 28.38408134418 25 15.649912891226009 35.08549457133467 23.800909188739556 25.463683348699767 26 15.87386533187134 26.518586598336935 30.114332083659324 27.4932159861324 27 20.504154754044958 32.60805705261137 24.630405761103823 22.257382432239844 28 13.086093716825225 27.65318201516478 35.73495664920613 23.52576761880386 29 18.222457485392194 24.767394851420644 29.41862528103123 27.591522382155937 30 16.07222320787149 32.384104611966045 31.371083377202808 20.172588802959663 31 21.09486567216271 23.271857903630647 25.31767799129203 30.31559843291461 32 25.34240001396067 29.90026845208145 21.083231779142174 23.674099754815707 33 21.56196647693726 24.17057613946711 25.500039264388946 28.767418119206685 34 21.566329186819964 24.964880185444255 25.018396093338723 28.450394534397063 35 23.13661389726691 25.396788463831683 24.153125299936303 27.313472338965106 36 22.675330039002624 28.656023593535046 27.06159855507049 21.60704781239184 37 17.091061389144997 26.807107145246245 30.46887497346018 25.63295649214858 38 20.208363023997812 21.981659167653124 30.93335815230511 26.876619656043953 39 21.688194216210086 21.91505513011055 26.95456673928155 29.442183914397813 40 22.893465533137693 19.464957259985518 32.405918161379546 25.23565904549725 41 22.59389278785887 22.909171288715417 23.050232241589423 31.44670368183629 42 26.604968254014423 19.528943671598466 29.564339791113454 24.30174828327366 43 29.057683750069074 21.688194216210086 24.406744167784005 24.847377865936835 44 20.59955267681336 22.110213685530056 30.7163860474721 26.573847590184485 45 19.071731675891375 19.32767732234318 28.865142820579194 32.73544818118625 46 27.805004319082784 23.486794077185063 25.734753056078276 22.97344854765388 47 15.531538029742048 21.784464680955026 39.707931115719425 22.9760661735835 48 20.722871942831052 22.992353623812253 27.3067828504783 28.9779915828784 49 21.3243442119928 16.648391759713572 37.54577209785268 24.481491930440953 50 24.88518801825358 17.64425300227152 30.02387856542465 27.44668041405025 51 19.765984241891903 18.64156848145703 26.55057980414341 35.041867472507654 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 75.0 1 195.5 2 316.0 3 590.5 4 865.0 5 645.0 6 425.0 7 458.5 8 492.0 9 523.0 10 554.0 11 704.0 12 854.0 13 871.0 14 888.0 15 833.0 16 778.0 17 776.0 18 774.0 19 744.0 20 714.0 21 807.5 22 901.0 23 916.0 24 931.0 25 1165.5 26 1803.5 27 2207.0 28 2482.0 29 2757.0 30 3560.0 31 4363.0 32 4321.0 33 4279.0 34 5014.0 35 5749.0 36 6534.5 37 7320.0 38 8626.5 39 9933.0 40 11986.5 41 14040.0 42 16299.5 43 18559.0 44 22956.0 45 27353.0 46 50563.5 47 73774.0 48 60682.0 49 47590.0 50 41889.5 51 36189.0 52 28479.0 53 20769.0 54 17857.0 55 14945.0 56 13430.0 57 11915.0 58 10684.0 59 9453.0 60 8520.0 61 7587.0 62 6360.0 63 5133.0 64 4353.0 65 3573.0 66 2891.0 67 2209.0 68 1850.0 69 1491.0 70 1251.5 71 1012.0 72 882.0 73 752.0 74 629.0 75 344.5 76 183.0 77 143.0 78 103.0 79 79.5 80 56.0 81 52.0 82 48.0 83 28.0 84 8.0 85 4.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 343823.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.09901075759784 #Duplication Level Percentage of deduplicated Percentage of total 1 73.23175917126424 26.435940621212822 2 11.018756882488118 7.955324464725876 3 4.401118703623279 4.766280942826854 4 2.4350097095302736 3.5160576679675413 5 1.6057540753381676 2.8983066819844536 6 1.1868244503696512 2.5705913160764506 7 0.9154027552560019 2.313159373666478 8 0.7047637112696055 2.035301823574885 9 0.5547923214215805 1.802470858130728 >10 3.7901161641733996 22.31976193811402 >50 0.07948999663563927 1.9364756757806916 >100 0.057363915097884 4.1791310528191 >500 0.0057363915097884 1.3329910472147564 >1k 0.010653298518178459 7.49947981312501 >5k 0.001638969002796686 4.942657438274335 >10k+ 8.19484501398343E-4 3.4960692845059906 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGC 11818 3.4372336929175766 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCG 9980 2.902656308623914 No Hit GAATCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTC 6728 1.956820806054278 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATCTCGGT 4210 1.224467240411491 No Hit GCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC 2636 0.7666735500533705 No Hit GAATGACTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCT 2487 0.7233372985518712 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTC 2483 0.7221739092498175 No Hit GAATCAGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTC 2226 0.647426146592869 No Hit CCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC 2129 0.6192139560180675 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAATCTCGGTCGTA 1881 0.5470838192907397 No Hit CTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGCT 1601 0.46564656814698263 Illumina Single End Adapter 2 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCT 1440 0.4188201487393223 No Hit TCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC 1144 0.33272934038735047 No Hit GAATATGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTC 1058 0.3077164703931965 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGC 1055 0.30684392841665625 No Hit GCTGTATCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC 1001 0.2911381728389317 No Hit CCTGTATCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC 744 0.21639041018198316 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCG 734 0.213481936926849 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAATCTCGGTCGT 696 0.2024297385573391 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATG 597 0.1736358533315107 No Hit GCTGACTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC 596 0.17334500600599728 No Hit CTGTCACTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGCT 570 0.1657829755426484 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCAATCTCGG 569 0.165492128217135 No Hit GAACTATCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCT 491 0.14280603682708834 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTAT 478 0.1390250215954139 No Hit CGCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTG 428 0.12448265531974301 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGC 426 0.12390096066871618 No Hit GAATACTACGGCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGC 411 0.11953825078601489 No Hit TCCTGTCTCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTG 403 0.11721147218190756 No Hit TCTGTATCTTATACACATCTGACGCAATCTCGGTCGTATGCCGTCTTCTGC 380 0.11052198369509894 No Hit GAATAATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATCTCGGT 359 0.10441418985931714 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5008390945341062 0.0 2 0.0 0.0 0.0 2.3561541839842013 0.0 3 0.0 0.0 0.0 3.0335376051049523 0.0 4 0.0 0.0 0.0 4.111126946132167 0.0 5 0.0 0.0 0.0 7.21621299331342 0.0 6 0.0 0.0 0.0 7.996556367665921 0.0 7 0.0 0.0 0.0 9.736114221561676 0.0 8 0.0 0.0 0.0 11.837486148396122 0.0 9 0.0 0.0 0.0 12.423834356631174 0.0 10 0.0 0.0 0.0 16.98839228323876 0.0 11 0.0 0.0 0.0 19.086274042167044 0.0 12 0.0 0.0 0.0 25.245547854564702 0.0 13 0.0 0.0 0.0 26.106746785409936 0.0 14 0.0 0.0 0.0 26.510152025897046 0.0 15 0.0 0.0 0.0 27.507176657757043 0.0 16 0.0 0.0 0.0 28.558008044837024 0.0 17 0.0 0.0 0.0 29.739429881072528 0.0 18 0.0 0.0 0.0 30.846394801976597 0.0 19 0.0 0.0 0.0 33.24414015350922 0.0 20 0.0 0.0 0.0 34.172815663873564 0.0 21 0.0 0.0 0.0 35.18990876119398 0.0 22 0.0 0.0 0.0 36.244812010831154 0.0 23 0.0 0.0 0.0 37.2016997117703 0.0 24 0.0 0.0 0.0 37.97360851368291 0.0 25 0.0 0.0 0.0 38.61754449236962 0.0 26 0.0 0.0 0.0 39.200111685372995 0.0 27 0.0 0.0 0.0 39.84404766405971 0.0 28 0.0 0.0 0.0 40.38386030021261 0.0 29 0.0 0.0 0.0 40.992894599837705 0.0 30 0.0 0.0 0.0 41.646428540266356 0.0 31 0.0 0.0 0.0 42.242374710243354 0.0 32 0.0 0.0 0.0 42.828722918478405 0.0 33 0.0 0.0 0.0 43.32694438708289 0.0 34 0.0 0.0 0.0 43.87722752695428 0.0 35 0.0 0.0 0.0 44.46619336111895 0.0 36 0.0 0.0 0.0 45.00746023389942 0.0 37 0.0 0.0 0.0 45.57344912934853 0.0 38 0.0 0.0 0.0 46.14147395607624 0.0 39 0.0 0.0 0.0 46.68884862269249 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCCC 35 1.2086093E-7 45.000004 4 TCCGGAC 20 7.0263806E-4 45.000004 15 GTGCAAG 20 7.0263806E-4 45.000004 1 TTCTACG 25 3.8850827E-5 45.000004 1 CGGGTCC 30 2.1610467E-6 45.000004 6 ACTATCA 20 7.0263806E-4 45.000004 12 TCGTTCC 20 7.0263806E-4 45.000004 44 TCGTTAG 65 0.0 45.000004 1 ACAGTCC 20 7.0263806E-4 45.000004 17 ACACGCG 20 7.0263806E-4 45.000004 36 CACGGTG 20 7.0263806E-4 45.000004 21 CACGGGC 40 6.7902874E-9 45.000004 4 CCGATCG 55 1.8189894E-12 45.000004 40 CCCTACA 40 6.7902874E-9 45.000004 27 GGCACGG 20 7.0263806E-4 45.000004 2 GGCACGA 20 7.0263806E-4 45.000004 8 TCTTACG 30 2.1610467E-6 45.000004 1 TTACTAG 20 7.0263806E-4 45.000004 1 CGATTGG 30 2.1610467E-6 45.000004 10 TTCCGAT 20 7.0263806E-4 45.000004 13 >>END_MODULE