SRR2934179.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934179.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1560972
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7704	0.49353864130810804	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3423	0.21928644459990312	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTT	2553	0.1635519407138629	No Hit
TTGAATCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCT	2354	0.15080347373303302	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTC	2071	0.13267374430803372	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCT	1770	0.11339088721642669	No Hit
CGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	1744	0.11172525836465996	No Hit
TTGAATGATACCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGC	1691	0.10832993801298166	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTC	1657	0.10615180797605595	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGC	1629	0.10435805382799947	No Hit
CCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1574	0.10083460818003141	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTAT	2205	0.0	43.367348	1
CGTTATT	1675	0.0	42.44776	1
CGTTTTT	4815	0.0	42.383175	1
CTCGTAG	115	0.0	41.08696	1
TTAGGGA	2780	0.0	40.953236	4
TCGTTAG	210	0.0	40.714287	1
CGTTAGG	395	0.0	40.443035	2
TTATGGG	3770	0.0	39.38992	3
TAGGGAC	1170	0.0	39.03846	5
TTACGGG	1385	0.0	38.501804	3
GGGCGAT	3175	0.0	38.40945	7
TATGGGA	2360	0.0	38.135593	4
TAGGGAA	1275	0.0	38.11765	5
AGGGCGA	1010	0.0	38.09406	6
GTTTATT	2485	0.0	37.756542	2
TAGGGAT	1540	0.0	37.694805	5
TAGGGCG	695	0.0	37.553955	5
ACACGAC	540	0.0	37.5	26
TATCGCG	30	1.1401093E-4	37.499996	1
CTAGGGA	1850	0.0	37.459457	4