SRR2934177.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934177.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	397631
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGC	4122	1.0366394974234905	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCG	3808	0.9576718113024386	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTC	2701	0.6792729943087938	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	1964	0.49392527242594264	No Hit
CTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGCT	1757	0.44186695705314727	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGGACAAT	1713	0.43080142141835015	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	1644	0.4134486496274184	No Hit
TCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	1192	0.29977541992450285	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTC	1021	0.2567707246165415	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCT	1002	0.25199242513787906	No Hit
GAATCAGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTC	972	0.24444774175051745	No Hit
CTGTCACTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGCT	716	0.18006644351169804	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGGACAATCGTA	713	0.17931197517296185	No Hit
CCTGTATCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	712	0.17906048572671646	No Hit
GCTGTATCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	641	0.1612047350432939	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCT	636	0.15994728781206696	No Hit
GAATATGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTC	552	0.13882217432745436	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGC	420	0.10562556742306309	No Hit
TCTGTATCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	419	0.10537407797681769	No Hit
TCCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTG	417	0.10487109908432692	No Hit
CCTGACTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	414	0.10411663074559076	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCC	30	2.161907E-6	45.000004	6
CGAAAAA	30	2.161907E-6	45.000004	22
TACGGGT	60	0.0	45.000004	4
CGAGGGT	30	2.161907E-6	45.000004	4
CCGCAGG	30	2.161907E-6	45.000004	2
GTGCAAC	20	7.027714E-4	45.0	16
ACGTTGG	25	3.886188E-5	45.0	2
TGGACCG	25	3.886188E-5	45.0	1
GTCTATC	20	7.027714E-4	45.0	2
GATCAGT	20	7.027714E-4	45.0	23
TCGATGG	20	7.027714E-4	45.0	2
ACGGGTC	25	3.886188E-5	45.0	5
TCGCTTG	25	3.886188E-5	45.0	1
ACGTGTT	20	7.027714E-4	45.0	40
AAACCCG	20	7.027714E-4	45.0	18
TTGCGGT	20	7.027714E-4	45.0	15
ACTCGGT	20	7.027714E-4	45.0	32
CCTGGTA	20	7.027714E-4	45.0	35
GTCTTAC	50	2.1827873E-11	45.0	31
ATACGGA	20	7.027714E-4	45.0	28

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content