SRR2934172.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934172.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	855242
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGC	2927	0.3422423127021358	No Hit
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	2741	0.32049408237668403	No Hit
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT	2586	0.3023705571054742	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCG	2376	0.2778161035122223	No Hit
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	1751	0.20473737257992475	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC	1734	0.20274963109856628	No Hit
TCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	1508	0.17632436199344748	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTACGGTAGT	1148	0.1342310129764441	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1027	0.12008297066795129	No Hit
CCTGTATCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	1002	0.1171598214306594	No Hit
CTGTCACTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT	905	0.10581800238996682	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAG	30	2.1648466E-6	45.000004	30
GCGATAT	30	2.1648466E-6	45.000004	9
TTAATCG	20	7.032273E-4	45.0	20
ATAATCG	20	7.032273E-4	45.0	17
TAGCGGA	20	7.032273E-4	45.0	25
CACGATT	20	7.032273E-4	45.0	10
TAACGCA	20	7.032273E-4	45.0	19
TCGATAT	20	7.032273E-4	45.0	18
ATCGTGA	20	7.032273E-4	45.0	30
CGGTGTA	20	7.032273E-4	45.0	20
AACGACG	20	7.032273E-4	45.0	13
AATTCGG	20	7.032273E-4	45.0	13
CCGAATA	25	3.8899663E-5	45.0	26
CGATCGG	20	7.032273E-4	45.0	3
ACGGGCG	125	0.0	43.199997	5
TGCTACG	75	0.0	42.000004	1
TAATACG	125	0.0	41.399998	4
TTGTTCG	120	0.0	41.250004	1
ACGGGTA	50	1.0804797E-9	40.5	5
GGCGATA	50	1.0804797E-9	40.5	8