SRR2934170.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934170.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	896803
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGC	4723	0.5266485504620301	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCG	3995	0.44547130194702744	No Hit
CCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	3492	0.3893831755692164	No Hit
CTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGCT	3037	0.3386473952473397	No Hit
GCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	2907	0.32415145801251777	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTC	2790	0.3111051145011781	No Hit
TCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	2454	0.27363869210963837	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGGCTAAGT	1686	0.1880011552146904	No Hit
CTGTCACTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGCT	1198	0.1335856369793589	No Hit
CCTGTATCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	1154	0.12867931976141916	No Hit
GCTGTATCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	1139	0.12700671161893973	No Hit
GAATCAGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTC	1064	0.11864367090654246	No Hit
TCTGTATCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	989	0.1102806301941452	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCT	980	0.10927706530865754	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTC	971	0.10827350042316986	No Hit
TCCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTG	953	0.10626637065219452	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTGCG	30	2.1649666E-6	45.000004	1
CAGTCGA	30	2.1649666E-6	45.000004	41
TCGCCGT	25	3.8901184E-5	45.0	25
CGTGAAG	20	7.0324563E-4	45.0	21
ATCCGGC	20	7.0324563E-4	45.0	6
CCGTTAG	20	7.0324563E-4	45.0	1
GCGTTAG	125	0.0	43.199997	1
CGTTAGG	225	0.0	43.0	2
CGTTTAT	290	0.0	42.672413	1
TTTCACG	95	0.0	42.63158	1
ACGGGTC	85	0.0	42.35294	5
CTTTACG	85	0.0	42.35294	1
GACCGAT	285	0.0	41.842106	9
AATACGG	140	0.0	41.785713	5
TGCGTAG	65	0.0	41.53846	1
TTCACGG	160	0.0	40.78125	2
TTATGGG	2090	0.0	40.69378	3
CGTTTGG	185	0.0	40.135136	2
CGCCGAT	45	1.9274012E-8	40.000004	28
TTAGGGA	1330	0.0	39.92481	4