SRR2934169.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934169.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1627815
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5547	0.340763538854231	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2496	0.15333437767805308	No Hit
CTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGCT	2258	0.13871355160137977	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	2047	0.12575139066785845	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTAT	1640	0.0	43.90244	1
CGTTATT	1405	0.0	41.797153	1
CGTTTTT	3425	0.0	41.51825	1
TTTACGG	950	0.0	40.5	2
TAGGGCG	785	0.0	40.127388	5
TTACGGG	1605	0.0	39.672894	3
TTATGGG	4405	0.0	39.585697	3
TATGGGA	2780	0.0	39.57734	4
TTAGGGA	3470	0.0	39.488472	4
GTTTACG	155	0.0	39.19355	1
TAGGGAT	1695	0.0	38.893806	5
CGTTAGG	570	0.0	38.68421	2
TAGGGAG	2210	0.0	38.178734	5
CGTAAGG	65	9.094947E-12	38.076927	2
CTAGGGA	2060	0.0	37.900486	4
GTACGGG	600	0.0	37.875	3
CACGACC	1060	0.0	37.78302	27
TACGGGT	245	0.0	37.65306	4
TATGGGG	3840	0.0	37.617184	4
AACACGT	1035	0.0	37.608696	41