SRR2934161.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934161.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	571237
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	2645	0.4630302308849042	TruSeq Adapter, Index 16 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGCT	2544	0.44534930335394945	TruSeq Adapter, Index 19 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	1761	0.30827835031694373	TruSeq Adapter, Index 16 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	1504	0.26328826739164307	TruSeq Adapter, Index 16 (95% over 22bp)
CCTGTATCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	914	0.16000364122071925	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCACTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGCT	870	0.15230105893000628	TruSeq Adapter, Index 19 (95% over 22bp)
TCCTGTCTCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTG	786	0.13759612910228153	No Hit
TCTGTATCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	783	0.13707095303700567	TruSeq Adapter, Index 19 (95% over 21bp)
GCTGTATCTTATACACATCTGACGCAAATCCCCTCGTATGCCGTCTTCTGC	605	0.10591050649730323	TruSeq Adapter, Index 19 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	40	6.8048394E-9	45.000004	1
CAAACGG	20	7.0303027E-4	45.000004	11
TGGACGT	20	7.0303027E-4	45.000004	39
GAATCGC	20	7.0303027E-4	45.000004	16
AACGGGC	20	7.0303027E-4	45.000004	4
ACGGATG	20	7.0303027E-4	45.000004	38
CGAATGT	20	7.0303027E-4	45.000004	29
TCCGTTC	20	7.0303027E-4	45.000004	14
ACTCGTA	20	7.0303027E-4	45.000004	33
GCGATAT	20	7.0303027E-4	45.000004	9
TTACGAG	20	7.0303027E-4	45.000004	1
TTACGAA	20	7.0303027E-4	45.000004	26
TGAATCG	20	7.0303027E-4	45.000004	15
CCACGCG	20	7.0303027E-4	45.000004	14
AATCGCG	20	7.0303027E-4	45.000004	17
ATCTCGC	25	3.888333E-5	45.0	31
CGTTATT	85	0.0	45.0	1
GTAGCGT	25	3.888333E-5	45.0	16
CCGTACG	25	3.888333E-5	45.0	1
CGTAGCA	25	3.888333E-5	45.0	20