SRR2934158.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934158.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	588253
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2552	0.43382694180905157	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC	2217	0.37687865595245584	No Hit
CTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	2187	0.3717788094578353	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG	1924	0.3270701551883288	No Hit
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	1870	0.3178904314980119	No Hit
TCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	1706	0.2900112706607531	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	1429	0.24292268802709038	No Hit
CTGTCACTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	861	0.1463655943956087	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTATCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	860	0.14619559951245467	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGGTTTGTT	807	0.13718587070529176	No Hit
GCTGTATCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	717	0.12188633122143024	No Hit
TCCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	649	0.11032667916695707	No Hit
TCTGTATCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	644	0.10947670475118698	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCA	30	2.163688E-6	45.000004	16
TCGTTAG	75	0.0	45.000004	1
CTACGAA	60	0.0	45.000004	11
GGTACAC	25	3.8884755E-5	45.0	8
CGAAACC	20	7.030475E-4	45.0	36
TGGACGG	20	7.030475E-4	45.0	2
GGATCGA	20	7.030475E-4	45.0	8
TAACGGG	40	6.8048394E-9	45.0	3
CCGCTAG	45	3.8380676E-10	45.0	1
CGTTCAT	35	1.2105738E-7	45.0	17
GCACCGT	20	7.030475E-4	45.0	9
ACGATTC	45	3.8380676E-10	45.0	13
GGCCAAT	20	7.030475E-4	45.0	8
TTCCCGC	20	7.030475E-4	45.0	35
CCACTAA	25	3.8884755E-5	45.0	35
TCGTCAG	25	3.8884755E-5	45.0	1
CATACGA	35	1.2105738E-7	45.0	18
TTAACGG	20	7.030475E-4	45.0	2
GAGTTAC	20	7.030475E-4	45.0	28
TAGGCGT	20	7.030475E-4	45.0	4