##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934157.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 401035 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.777874749086738 31.0 31.0 34.0 30.0 34.0 2 31.913286870223295 33.0 31.0 34.0 30.0 34.0 3 32.00154101262982 33.0 31.0 34.0 30.0 34.0 4 35.58164499357911 37.0 35.0 37.0 33.0 37.0 5 29.488999713241988 35.0 35.0 37.0 0.0 37.0 6 23.653164935728803 35.0 10.0 37.0 0.0 37.0 7 30.31955315620831 35.0 19.0 37.0 17.0 37.0 8 33.953181143790445 35.0 32.0 37.0 32.0 37.0 9 36.72222125250913 37.0 35.0 39.0 34.0 39.0 10 36.87359956113556 39.0 37.0 39.0 33.0 39.0 11 37.04258730534741 39.0 37.0 39.0 34.0 39.0 12 37.03531611954069 39.0 37.0 39.0 34.0 39.0 13 36.9077187776628 39.0 37.0 39.0 33.0 39.0 14 37.98780655055045 40.0 37.0 41.0 33.0 41.0 15 37.843278018128096 40.0 37.0 41.0 33.0 41.0 16 38.13825476579351 40.0 37.0 41.0 34.0 41.0 17 38.11297018963432 40.0 37.0 41.0 34.0 41.0 18 38.209201191915916 40.0 37.0 41.0 34.0 41.0 19 38.22888276584338 40.0 37.0 41.0 34.0 41.0 20 38.10159961100652 40.0 37.0 41.0 34.0 41.0 21 38.04063735085467 40.0 37.0 41.0 34.0 41.0 22 38.11392771204508 40.0 37.0 41.0 34.0 41.0 23 38.04307604074457 40.0 37.0 41.0 34.0 41.0 24 38.01812061291408 40.0 37.0 41.0 34.0 41.0 25 37.79378857206977 40.0 36.0 41.0 33.0 41.0 26 37.642003815128355 39.0 36.0 41.0 33.0 41.0 27 36.789801388906206 39.0 36.0 41.0 32.0 41.0 28 37.18711085067388 39.0 36.0 41.0 32.0 41.0 29 37.423748550625255 39.0 36.0 41.0 32.0 41.0 30 37.48884760681736 39.0 36.0 41.0 33.0 41.0 31 37.498694627650956 39.0 36.0 41.0 33.0 41.0 32 37.37241886618375 39.0 36.0 41.0 33.0 41.0 33 36.29876195344546 39.0 35.0 41.0 31.0 41.0 34 36.71231438652487 39.0 35.0 41.0 31.0 41.0 35 37.004972134601715 39.0 35.0 41.0 31.0 41.0 36 37.190050743700674 39.0 35.0 41.0 32.0 41.0 37 37.28839378109143 39.0 35.0 41.0 33.0 41.0 38 37.197820639096335 39.0 35.0 41.0 32.0 41.0 39 37.224671163364796 39.0 35.0 41.0 33.0 41.0 40 37.12371987482389 39.0 35.0 40.0 32.0 41.0 41 37.071933871108506 39.0 35.0 40.0 32.0 41.0 42 37.14219706509407 39.0 35.0 40.0 33.0 41.0 43 37.10169685937636 39.0 35.0 40.0 33.0 41.0 44 37.16774346378745 39.0 35.0 40.0 33.0 41.0 45 37.100482501527296 39.0 35.0 40.0 33.0 41.0 46 37.03748799980052 39.0 35.0 40.0 32.0 41.0 47 36.91329933796302 39.0 35.0 40.0 32.0 41.0 48 36.9298963930829 39.0 35.0 40.0 32.0 41.0 49 37.02318002169387 39.0 35.0 40.0 33.0 41.0 50 36.92376725223484 39.0 35.0 40.0 32.0 41.0 51 36.21177952049073 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 3.0 11 5.0 12 7.0 13 7.0 14 4.0 15 15.0 16 22.0 17 39.0 18 66.0 19 116.0 20 200.0 21 404.0 22 689.0 23 991.0 24 1391.0 25 1753.0 26 2135.0 27 2501.0 28 3276.0 29 4536.0 30 6508.0 31 9060.0 32 13373.0 33 21466.0 34 29308.0 35 39505.0 36 48820.0 37 71823.0 38 79345.0 39 63627.0 40 36.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.531013502562118 4.4215592155298165 51.1469073771616 16.90051990474647 2 17.889710374406224 10.746692932038352 50.33201590883589 21.031580784719537 3 19.59429974939843 10.49409652524094 49.47149251312229 20.44011121223833 4 18.46970962634184 3.944543493710025 53.35519343698181 24.230553442966325 5 17.71042427718279 21.7257845325221 39.38808333437231 21.1757078559228 6 15.175732791402247 32.436071664567926 38.168987744211854 14.219207799817971 7 75.99062425972795 1.9377361078210131 15.801613325520217 6.270026306930816 8 75.45924919271386 6.277506950764895 10.198611093794806 8.064632762726445 9 70.60456069919084 4.701335294924383 12.545538419339957 12.148565586544816 10 39.25542658371464 23.813632226613638 19.678581669929056 17.252359519742665 11 28.156644681885624 22.548904709065294 27.94294762302542 21.35150298602366 12 23.514655828044933 18.999089855000186 33.25021506851023 24.236039248444648 13 21.64648970788086 24.397870510055235 34.9006944531026 19.054945328961313 14 17.99294325931652 29.392197688481055 30.526263293727478 22.088595758474945 15 14.609946762751381 23.308190058224344 40.23539092597903 21.846472253045246 16 16.168663582979043 23.47949680202476 32.492425848117996 27.859413766878205 17 16.51576545688032 23.959504781378186 30.826735821063 28.697993940678497 18 17.692470731981 22.22848379817223 34.088795242310525 25.99025022753625 19 19.643173289114415 23.980699938908074 29.865223733589335 26.51090303838817 20 22.443926340593716 25.081102646901144 32.15829042352912 20.316680588976023 21 22.1377186529854 28.070866632588178 28.719438453002855 21.07197626142357 22 19.209295946737818 23.87821511838119 29.33933447205356 27.573154462827432 23 18.891617938583913 26.327128554864288 27.667410575136834 27.113842931414965 24 21.404615557245627 23.043873976086875 29.253556422756116 26.297954043911382 25 18.680414427668406 28.165621454486516 26.548804967147504 26.60515915069757 26 17.71017492238832 27.810789581956683 28.28830401336542 26.190731482289575 27 19.49430847681624 28.560848803720372 26.995150049247574 24.949692670215818 28 15.989377485755607 25.381076464647723 32.88790255214632 25.741643497450344 29 18.16524742229481 25.584300622140212 29.573977333649182 26.67647462191579 30 21.469447803807647 26.471754335656488 27.08641390402334 24.972383956512523 31 20.970987569663496 26.79541685887765 24.737491740122433 27.496103831336416 32 21.202638173725486 31.836622738663706 22.05094318451008 24.909795903100726 33 21.522560375029613 26.849526849277495 22.429962472103433 29.197950303589465 34 18.470457690725247 26.53982819454661 26.458787886344087 28.530926228384057 35 18.211378059271635 27.862156669617367 23.691448377323677 30.235016893787325 36 20.50145249167778 26.715872679441944 25.288067126310672 27.494607702569603 37 16.727467677384766 26.35156532472228 29.257296744673155 27.663670253219795 38 19.81672422606506 27.504083184759438 26.508908200032415 26.170284389143095 39 22.00406448314985 26.869724587629506 25.848367349483215 25.27784357973743 40 22.99874075828793 24.41632276484596 26.29072275487177 26.294213721994343 41 17.733115563479494 26.086251823406936 23.881706085503758 32.29892652760981 42 19.281858191928386 25.58878900844066 26.79815976161682 28.331193038014142 43 21.393643946288975 22.761853703542084 26.795915568466594 29.048586781702348 44 20.046878701360228 22.817210467914272 28.802722954355602 28.33318787636989 45 20.169062550650192 22.83167304599349 26.650791078085454 30.348473325270863 46 23.916615756729463 24.252496664879626 27.28564838480432 24.545239193586596 47 17.12119889785181 24.02259154437892 32.44654456593564 26.40966499183363 48 17.95952971685763 24.349994389517125 28.13544952435573 29.555026369269516 49 20.27503833829965 20.305210268430436 32.886157068585035 26.533594324684877 50 21.089929806625356 20.19200319174137 28.781278442031244 29.93678855960203 51 18.90084406597928 21.086438839502787 25.99349183986435 34.019225254653584 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 77.0 1 185.5 2 294.0 3 627.0 4 960.0 5 685.5 6 411.0 7 446.5 8 482.0 9 597.0 10 712.0 11 772.5 12 833.0 13 877.5 14 922.0 15 886.0 16 850.0 17 883.5 18 917.0 19 858.0 20 799.0 21 954.0 22 1109.0 23 1188.5 24 1268.0 25 1479.5 26 2068.0 27 2445.0 28 2824.0 29 3203.0 30 3851.5 31 4500.0 32 5197.5 33 5895.0 34 7075.5 35 8256.0 36 9241.0 37 10226.0 38 11307.5 39 12389.0 40 14987.0 41 17585.0 42 20792.5 43 24000.0 44 28759.5 45 33519.0 46 46268.5 47 59018.0 48 57887.5 49 56757.0 50 51224.0 51 45691.0 52 36744.0 53 27797.0 54 23336.5 55 18876.0 56 16713.5 57 14551.0 58 13465.0 59 12379.0 60 10963.5 61 9548.0 62 8265.0 63 6982.0 64 6280.5 65 5579.0 66 4586.5 67 3594.0 68 2844.5 69 2095.0 70 1914.0 71 1733.0 72 1476.5 73 1220.0 74 1123.0 75 685.5 76 345.0 77 282.0 78 219.0 79 204.0 80 189.0 81 128.5 82 68.0 83 40.0 84 12.0 85 12.0 86 12.0 87 6.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 401035.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.18053327121303 #Duplication Level Percentage of deduplicated Percentage of total 1 73.62035868612074 30.317256303124324 2 11.0015464294735 9.060990975474567 3 4.144144441507567 5.119742341626448 4 2.3471543382921554 3.8662826928284844 5 1.577986662392834 3.249116612609925 6 1.1570053530409579 2.858765846152485 7 0.8949949248035626 2.579945779490794 8 0.7413373292497114 2.4422933241887956 9 0.5968730166835513 2.212159421000365 >10 3.788325513248738 25.851374018065464 >50 0.07568258682277008 2.146145134493422 >100 0.04342443506224513 3.45488237101405 >500 0.005583141650860088 1.6858007073588965 >1k 0.005583141650860088 5.155244472571986 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGC 4116 1.0263443340356826 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCG 3524 0.8787262957098507 No Hit GAATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC 2512 0.6263792437069083 No Hit CCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 2171 0.5413492587928734 TruSeq Adapter, Index 16 (95% over 21bp) CTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGCT 2008 0.5007044272943758 TruSeq Adapter, Index 13 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 1841 0.45906217661800097 TruSeq Adapter, Index 16 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 1512 0.3770244492375977 TruSeq Adapter, Index 16 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTAGCACT 1464 0.3650554191030708 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTC 1032 0.25733414789232856 No Hit GAATGACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCT 990 0.24686124652461755 No Hit GAATCAGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC 945 0.23564028077349858 No Hit CCTGTATCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 803 0.20023189995885646 TruSeq Adapter, Index 13 (95% over 21bp) GCTGTATCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 763 0.19025770818008403 TruSeq Adapter, Index 13 (95% over 21bp) TCTGTATCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 678 0.16906255065019263 TruSeq Adapter, Index 13 (95% over 21bp) CTGTCACTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGCT 674 0.1680651314723154 TruSeq Adapter, Index 13 (95% over 22bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACTAGCACTCGTA 658 0.1640754547608064 No Hit TCCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTG 561 0.13988803969728328 No Hit GAACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCT 527 0.1314099766853267 No Hit GAATATGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC 499 0.12442804244018602 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGC 463 0.11545126983929083 No Hit CGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTG 439 0.10946675477202737 No Hit GCTGACTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 409 0.10198611093794807 TruSeq Adapter, Index 16 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5333699053698555 0.0 2 0.0 0.0 0.0 2.040470283142369 0.0 3 0.0 0.0 0.0 2.7573653172416375 0.0 4 0.0 0.0 0.0 3.6188861321331056 0.0 5 0.0 0.0 0.0 5.49104192900869 0.0 6 0.0 0.0 0.0 6.462528208261125 0.0 7 0.0 0.0 0.0 7.896068921665191 0.0 8 0.0 0.0 0.0 9.984415325345669 0.0 9 0.0 0.0 0.0 10.787836473125788 0.0 10 0.0 0.0 0.0 13.3040757041156 0.0 11 0.0 0.0 0.0 15.965688780281022 0.0 12 0.0 0.0 0.0 19.585821686386474 0.0 13 0.0 0.0 0.0 20.458314112234593 0.0 14 0.0 0.0 0.0 20.783472764222573 0.0 15 0.0 0.0 0.0 21.40287007368434 0.0 16 0.0 0.0 0.0 22.473100851546622 0.0 17 0.0 0.0 0.0 23.874973506053088 0.0 18 0.0 0.0 0.0 25.493784831747853 0.0 19 0.0 0.0 0.0 26.950016831448625 0.0 20 0.0 0.0 0.0 27.971623424389392 0.0 21 0.0 0.0 0.0 29.146333861134316 0.0 22 0.0 0.0 0.0 30.347974615681924 0.0 23 0.0 0.0 0.0 31.56382859351428 0.0 24 0.0 0.0 0.0 32.51636390838705 0.0 25 0.0 0.0 0.0 33.270911516451186 0.0 26 0.0 0.0 0.0 33.961374942336704 0.0 27 0.0 0.0 0.0 34.69896642437693 0.0 28 0.0 0.0 0.0 35.38394404478412 0.0 29 0.0 0.0 0.0 36.13300584736993 0.0 30 0.0 0.0 0.0 36.9538818307629 0.0 31 0.0 0.0 0.0 37.68100041143541 0.0 32 0.0 0.0 0.0 38.373957385265626 0.0 33 0.0 0.0 0.0 39.02078372211902 0.0 34 2.493547944693107E-4 0.0 0.0 39.76211552607628 0.0 35 2.493547944693107E-4 0.0 0.0 40.47851185058661 0.0 36 2.493547944693107E-4 0.0 0.0 41.09865722443178 0.0 37 2.493547944693107E-4 0.0 0.0 41.734511950328525 0.0 38 2.493547944693107E-4 0.0 0.0 42.415749248818685 0.0 39 2.493547944693107E-4 0.0 0.0 43.10346977196504 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAGCGAT 20 7.027787E-4 45.0 21 TCGCAAT 25 3.8862483E-5 45.0 22 CATGCGG 25 3.8862483E-5 45.0 2 ACCGCAT 20 7.027787E-4 45.0 34 CGCATGG 25 3.8862483E-5 45.0 2 CGCATAT 20 7.027787E-4 45.0 36 TCTTACG 55 1.8189894E-12 45.0 1 CCTACGG 20 7.027787E-4 45.0 2 CTAAGAC 20 7.027787E-4 45.0 36 ACGGGTA 50 2.1827873E-11 45.0 5 CCGCTAG 20 7.027787E-4 45.0 1 ACGGGAC 70 0.0 45.0 5 ATCGTAT 40 6.7957444E-9 45.0 33 GCTTACG 20 7.027787E-4 45.0 1 CCATAGC 35 1.2092823E-7 45.0 35 TTAACGG 20 7.027787E-4 45.0 2 CATAAGT 20 7.027787E-4 45.0 18 CCGGTAC 20 7.027787E-4 45.0 11 TTGCCAA 20 7.027787E-4 45.0 1 GACGCAT 20 7.027787E-4 45.0 29 >>END_MODULE