SRR2934155.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934155.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	296352
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base sequence quality

$Per base quality graph$

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGC	6720	2.2675736961451247	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCG	5899	1.9905382788035848	No Hit
GAATCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTC	4254	1.4354551344347262	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCGATCAT	2289	0.7723922902494331	No Hit
CCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGC	1669	0.5631816218550912	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTC	1539	0.5193148688046647	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCT	1522	0.5135784472519166	No Hit
GCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGC	1445	0.4875958319835871	No Hit
GAATCAGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTC	1429	0.4821968469927653	No Hit
TCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGC	1113	0.37556689342403626	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCGATCATCGTA	1107	0.37354227405247814	No Hit
CTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGCT	995	0.3357493791167261	No Hit
GAACTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCT	978	0.33001295756397797	No Hit
GAATATGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTC	804	0.27129899578879174	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGC	599	0.20212450059388837	No Hit
CCTGTATCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGC	562	0.18963934780261313	No Hit
GCTGTATCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGC	522	0.1761418853255588	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCG	490	0.16534391534391535	No Hit
TCCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTG	479	0.1616321131627254	No Hit
TCTGTATCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGC	395	0.13328744196091136	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACCGATCATCGT	391	0.1319376957132059	No Hit
GAACTATCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCT	377	0.1272135838462369	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCACCGATCATCGTATG	374	0.12620127416045784	No Hit
CTGTCACTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGCT	335	0.11304124824532988	No Hit
CGCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTG	315	0.10629251700680273	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGG	30	2.1600317E-6	45.000004	12
AGGGTAC	30	2.1600317E-6	45.000004	6
CGTTAGG	75	0.0	45.000004	2
CGAATGC	30	2.1600317E-6	45.000004	45
GTCGGGA	30	2.1600317E-6	45.000004	4
CGGGTAC	20	7.024806E-4	45.0	6
TAATAGG	20	7.024806E-4	45.0	18
TAATACG	180	0.0	45.0	4
ATTAGTA	20	7.024806E-4	45.0	15
GTCTGCA	20	7.024806E-4	45.0	10
CTCCGCA	20	7.024806E-4	45.0	28
GCGAATC	20	7.024806E-4	45.0	9
GCGAAGA	20	7.024806E-4	45.0	35
TTTCGTG	35	1.2078453E-7	45.0	1
CCGTGAC	35	1.2078453E-7	45.0	37
GCACGAT	20	7.024806E-4	45.0	41
CACGATG	20	7.024806E-4	45.0	42
CAATTGA	20	7.024806E-4	45.0	14
GGTCACG	20	7.024806E-4	45.0	9
TAAGTAT	20	7.024806E-4	45.0	23

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content