SRR2934147.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934147.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1972406
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC	5807	0.2944120023970724	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGCT	5357	0.2715972269400924	TruSeq Adapter, Index 27 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC	3782	0.19174551284066263	TruSeq Adapter, Index 20 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC	3553	0.18013532710811062	TruSeq Adapter, Index 20 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2224	0.11275569025849647	No Hit
CCTGTATCTTATACACATCTGACGCCGGATTACTCGTATGCCGTCTTCTGC	2072	0.10504936610413881	TruSeq Adapter, Index 27 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATCG	20	7.034515E-4	45.000004	2
GTATCGA	20	7.034515E-4	45.000004	25
CGTTTAT	555	0.0	41.351357	1
TAGGGCG	735	0.0	41.32653	5
TCGTTAG	240	0.0	41.250004	1
TATGGGA	3350	0.0	40.90299	4
TTATGGG	5235	0.0	40.873924	3
TTAGGGA	4260	0.0	40.246475	4
TAGGGAT	2310	0.0	40.129868	5
CGTTATT	445	0.0	39.94382	1
CGTTAGG	455	0.0	39.56044	2
TTTACGG	955	0.0	39.34555	2
CTATGGG	2625	0.0	39.342857	3
TACGGGA	1150	0.0	39.326088	4
TATGGGC	1505	0.0	39.31894	4
CTAGGGA	2805	0.0	39.304813	4
TAGGGAC	1700	0.0	39.176468	5
AGGCACG	535	0.0	39.11215	10
TTTATGG	3060	0.0	38.676468	2
ATAGACG	35	6.250566E-6	38.571426	27