SRR2934143.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934143.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	720771
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	2607	0.3616960171816014	No Hit
CTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGCT	2205	0.30592240808800575	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	1669	0.23155759596321163	No Hit
GCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	1530	0.21227269132637136	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGC	1310	0.18174982067813494	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTC	1117	0.1549729387003639	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCG	1082	0.15011702746087174	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	984	0.13652047599029374	No Hit
CCTGTATCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	915	0.12694739383243778	No Hit
CTGTCACTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGCT	914	0.1268086535113094	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTG	805	0.11168595850831957	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCC	778	0.10793996983785419	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	30	2.16437E-6	45.000004	14
TAATACG	35	1.2110831E-7	45.0	4
ATCTCGC	20	7.031535E-4	45.0	12
ATAGGCG	20	7.031535E-4	45.0	37
AACGGGG	35	1.2110831E-7	45.0	4
ACGATCG	45	3.8380676E-10	45.0	33
TTAACGG	20	7.031535E-4	45.0	2
TTTATCG	20	7.031535E-4	45.0	2
CGTTATT	215	0.0	43.953487	1
CGTTTAT	355	0.0	42.464787	1
TAACGGG	80	0.0	42.1875	3
TAGGGCG	305	0.0	42.049183	5
AGGGCGA	455	0.0	42.032967	6
TCGTTTG	120	0.0	41.250004	1
CTTTACG	115	0.0	41.086956	1
TATGGGT	490	0.0	40.867348	4
TGTCGAG	50	1.0804797E-9	40.5	1
TTAGGGT	725	0.0	40.34483	4
CGTTCTG	95	0.0	40.263157	1
CGTTAGG	180	0.0	40.0	2