##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934139.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1859776 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.92916835145738 33.0 31.0 34.0 30.0 34.0 2 32.09786985099281 33.0 31.0 34.0 30.0 34.0 3 32.16792291114629 34.0 31.0 34.0 30.0 34.0 4 35.6966957310988 37.0 35.0 37.0 35.0 37.0 5 29.648299580164494 37.0 35.0 37.0 0.0 37.0 6 23.81873354640559 35.0 11.0 37.0 0.0 37.0 7 30.454138025224545 35.0 19.0 37.0 17.0 37.0 8 34.14122883616091 35.0 32.0 37.0 32.0 37.0 9 36.88864089008569 38.0 37.0 39.0 34.0 39.0 10 36.98139722203104 39.0 37.0 39.0 34.0 39.0 11 37.17087810575037 39.0 37.0 39.0 34.0 39.0 12 37.095043166488864 39.0 37.0 39.0 34.0 39.0 13 37.00273366254861 39.0 37.0 39.0 33.0 39.0 14 37.940681565952026 40.0 37.0 41.0 33.0 41.0 15 37.82201673749957 40.0 37.0 41.0 33.0 41.0 16 38.135002817543615 40.0 37.0 41.0 33.0 41.0 17 38.124041282391 40.0 37.0 41.0 33.0 41.0 18 38.205020927251454 40.0 37.0 41.0 34.0 41.0 19 38.18904480969751 40.0 37.0 41.0 34.0 41.0 20 38.05908883650504 40.0 37.0 41.0 33.0 41.0 21 37.987089843077875 40.0 37.0 41.0 33.0 41.0 22 38.10037284060016 40.0 37.0 41.0 34.0 41.0 23 38.001559865274096 40.0 36.0 41.0 34.0 41.0 24 37.98875563508724 40.0 36.0 41.0 34.0 41.0 25 37.78808899566399 40.0 36.0 41.0 33.0 41.0 26 37.697060828831 40.0 36.0 41.0 33.0 41.0 27 36.84528997040504 39.0 35.0 41.0 32.0 41.0 28 37.19688392580612 39.0 35.0 41.0 32.0 41.0 29 37.45443644826044 40.0 35.0 41.0 32.0 41.0 30 37.427427281565095 39.0 35.0 41.0 33.0 41.0 31 37.4258405313328 39.0 35.0 41.0 33.0 41.0 32 37.31564876630304 39.0 35.0 41.0 33.0 41.0 33 36.093571483877625 39.0 35.0 41.0 30.0 41.0 34 36.42963883822568 39.0 35.0 41.0 30.0 41.0 35 36.710188216215286 39.0 35.0 41.0 30.0 41.0 36 36.839020398155476 39.0 35.0 41.0 31.0 41.0 37 36.93598046216319 39.0 35.0 41.0 31.0 41.0 38 36.9044422554114 39.0 35.0 41.0 31.0 41.0 39 36.860030455280636 39.0 35.0 41.0 31.0 41.0 40 36.77260756134072 39.0 35.0 41.0 31.0 41.0 41 36.69054068877112 39.0 35.0 41.0 31.0 41.0 42 36.806126114112665 39.0 35.0 41.0 31.0 41.0 43 36.72417699765993 39.0 35.0 41.0 31.0 41.0 44 36.78767389190956 39.0 35.0 41.0 32.0 41.0 45 36.713173521972536 39.0 35.0 41.0 32.0 41.0 46 36.64764036098971 39.0 35.0 41.0 31.0 41.0 47 36.56279519684091 39.0 35.0 40.0 31.0 41.0 48 36.52868463728965 39.0 35.0 40.0 31.0 41.0 49 36.566411761416425 39.0 35.0 40.0 31.0 41.0 50 36.467235839154824 39.0 35.0 40.0 31.0 41.0 51 35.7842137977907 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 13.0 10 19.0 11 16.0 12 22.0 13 20.0 14 29.0 15 43.0 16 73.0 17 160.0 18 320.0 19 608.0 20 1256.0 21 2468.0 22 4305.0 23 6852.0 24 9522.0 25 12645.0 26 15123.0 27 16605.0 28 18740.0 29 22677.0 30 30727.0 31 42959.0 32 62824.0 33 99951.0 34 134926.0 35 159960.0 36 210030.0 37 314943.0 38 369344.0 39 322402.0 40 191.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.608365738669605 4.04473441962903 52.79141143879693 16.555488402904437 2 20.95687867786228 8.905588630028562 49.31222899962146 20.825303692487697 3 19.346415912453974 8.891232062355897 51.065719742592655 20.696632282597474 4 17.268638803812934 4.421769073264737 53.820083709005814 24.489508413916514 5 17.264928679582916 21.689977717746654 40.957566932791906 20.08752666987852 6 15.632366478543652 31.66897518840979 39.362159743969166 13.336498589077394 7 79.70379228466223 1.8770540108056024 13.787090488316872 4.632063216215286 8 80.83919783887951 5.1183583399291095 9.207184090987301 4.835259730204068 9 75.69658926666438 4.616362400633194 10.702633005265149 8.984415327437283 10 39.69478044667745 25.724065693933035 19.002664837055647 15.578489022333871 11 32.377608916342616 22.296394834646755 25.42381448088372 19.902181768126916 12 26.543572989435287 20.15753510100141 30.321070924670497 22.977820984892805 13 25.887526239719193 20.780298272480128 34.195139629718845 19.137035858081834 14 21.360421900271863 24.05590780825218 33.648568429746376 20.935101861729585 15 18.84780747788981 22.045181785333288 37.248840720602914 21.858170016173993 16 22.859365859114217 23.146282132902027 30.30456356034275 23.689788447641007 17 23.240702106060084 24.614577239409478 29.434942702777107 22.70977795175333 18 24.196462369661724 21.99313250628033 30.82349702329743 22.986908100760523 19 23.707801369627308 25.202336195326748 28.170435579338587 22.919426855707353 20 23.786144137788636 27.1775740734368 29.827893251660413 19.208388537114146 21 23.02707422829416 27.715434546956192 30.36795829175126 18.88953293299838 22 21.62615282700712 22.219611394060358 32.49230014797481 23.661935630957707 23 21.253365996765204 25.07597689184074 31.103907137203617 22.56674997419044 24 22.074325080009636 25.023013524209368 29.388700574692866 23.51396082108813 25 22.250260246395264 27.757321311813897 26.17965819539557 23.812760246395264 26 20.454882738566365 23.82948269038852 29.300517911834547 26.415116659210568 27 20.6900185828831 25.470755617880865 29.312669912935753 24.526555886300287 28 17.613357737706046 24.757443907223237 30.709666110327266 26.919532244743454 29 20.35261235761726 24.286419439760486 29.872307202587837 25.488661000034412 30 22.3924816752125 24.818795381809423 29.643086049072576 23.145636893905504 31 22.142344024226574 24.786479662066828 27.693012491826973 25.378163821879625 32 23.924547902543104 26.43942066141299 26.406728552255753 23.229302883788154 33 22.089219346846072 27.73065143329089 24.27808510272205 25.90204411714099 34 20.167428765614783 25.95248029870264 29.609694931002444 24.270396004680133 35 20.686308458653084 26.96297833717609 27.09622018995836 25.254493014212464 36 21.15335395230393 27.087885852919925 25.973450566089678 25.785309628686466 37 19.243392752675593 28.444016913864896 26.35457173337004 25.95801860008947 38 21.282993220688944 27.686022402697958 25.050705031143533 25.980279345469565 39 21.000754929625934 28.042248098695755 25.478283406173645 25.478713565504663 40 23.011588492377577 25.985279947692625 27.55245793041743 23.450673629512373 41 20.499511769159295 25.551786881861045 26.006196445163287 27.942504903816374 42 21.899465311951545 22.664880071578512 28.9437007467566 26.491953869713342 43 20.68356619291786 22.702411473209676 28.842882153549677 27.77114018032279 44 20.99537793798823 23.137248786950686 28.37610550948071 27.491267765580368 45 20.666090970095325 22.497870711311467 27.126815272376888 29.70922304621632 46 22.295265666402837 24.406487663030386 27.380447967927317 25.917798702639455 47 17.855860060566435 24.947896951030664 32.04504198355071 25.151201004852197 48 18.99131938470009 26.32058914621976 28.2424872672838 26.445604201796346 49 21.572275370797346 22.942601689665853 30.22213427853677 25.262988661000037 50 20.395950910217145 23.6186508482742 28.2789970405038 27.706401201004855 51 19.36292327678172 23.109772359682026 27.054010805602395 30.473293557933857 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 351.0 1 952.5 2 1554.0 3 7719.0 4 13884.0 5 9288.0 6 4692.0 7 4542.0 8 4392.0 9 4545.5 10 4699.0 11 4737.0 12 4775.0 13 4717.5 14 4660.0 15 4491.5 16 4323.0 17 4319.5 18 4316.0 19 4455.5 20 4595.0 21 4995.0 22 5395.0 23 5805.5 24 6216.0 25 7939.5 26 11343.5 27 13024.0 28 14808.0 29 16592.0 30 20519.5 31 24447.0 32 29284.0 33 34121.0 34 39278.5 35 44436.0 36 48309.5 37 52183.0 38 56953.0 39 61723.0 40 69940.0 41 78157.0 42 89094.0 43 100031.0 44 115896.0 45 131761.0 46 175068.5 47 218376.0 48 211834.0 49 205292.0 50 195300.0 51 185308.0 52 165288.5 53 145269.0 54 129675.5 55 114082.0 56 104069.5 57 94057.0 58 84611.0 59 75165.0 60 66035.0 61 56905.0 62 50189.0 63 43473.0 64 38101.0 65 32729.0 66 27280.5 67 21832.0 68 18145.0 69 14458.0 70 11848.5 71 9239.0 72 7667.5 73 6096.0 74 4977.0 75 2833.0 76 1808.0 77 1407.0 78 1006.0 79 798.5 80 591.0 81 386.0 82 181.0 83 115.0 84 49.0 85 29.0 86 9.0 87 6.0 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1859776.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.60288243665027 #Duplication Level Percentage of deduplicated Percentage of total 1 74.43297361879198 29.477603036353102 2 10.836134399362047 8.58284313371354 3 3.9243175016352363 4.662428539840481 4 2.0298638724805236 3.215538412169993 5 1.3154414876319307 2.6047637293489845 6 0.9437800107826213 2.2425845287850805 7 0.7464893599453791 2.069419125348901 8 0.6133934949928062 1.9433720375684902 9 0.5043687807484678 1.7977011775828384 >10 4.515059763349165 31.657207281820316 >50 0.08741413797428767 2.3248405738528053 >100 0.043279243470750184 2.954357583483338 >500 0.003579461616678428 0.9551844237732312 >1k 0.0034167588159203176 3.291468614084201 >5k 0.0 0.0 >10k+ 4.881084022743311E-4 2.2206878022747327 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGC 12939 0.6957289480023401 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCG 11483 0.6174399497573901 No Hit GAATCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTC 10042 0.5399575002580955 RNA PCR Primer, Index 13 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4693 0.25234221755738323 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCAAAGCT 4103 0.2206179668949379 No Hit CCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTGC 3623 0.1948084070339654 RNA PCR Primer, Index 13 (95% over 24bp) GAATCAGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTC 3582 0.1926038404625073 RNA PCR Primer, Index 13 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTGC 3497 0.1880333975704601 Illumina Single End Adapter 1 (95% over 23bp) GAATGATCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTC 3483 0.18728061874118174 No Hit CTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTGCT 3328 0.17894628170274268 RNA PCR Primer, Index 13 (96% over 25bp) GAATGACTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCT 3062 0.16464348394645376 No Hit GAACTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCT 2439 0.13114482604356653 Illumina Single End Adapter 1 (95% over 21bp) CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2186 0.11754103720017894 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTA 2166 0.11646563887263842 No Hit GAATATGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTC 2119 0.1139384528029182 RNA PCR Primer, Index 13 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTG 2098 0.11280928455900065 RNA PCR Primer, Index 13 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTGC 2054 0.1104434082384115 Illumina Single End Adapter 1 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.19330284937540865 0.0 2 0.0 0.0 0.0 0.7399278192642554 0.0 3 0.0 0.0 0.0 1.069161017240786 0.0 4 0.0 0.0 0.0 1.5466916445851544 0.0 5 0.0 0.0 0.0 2.7443627619670328 0.0 6 0.0 0.0 0.0 3.564730376131319 0.0 7 0.0 0.0 0.0 4.577540521008982 0.0 8 0.0 0.0 0.0 6.026263377955194 0.0 9 0.0 0.0 0.0 6.6734918613854575 0.0 10 0.0 0.0 0.0 8.454297721876182 0.0 11 0.0 0.0 0.0 10.225586307168175 0.0 12 5.376991637702605E-5 0.0 0.0 12.601732681785334 0.0 13 1.075398327540521E-4 0.0 0.0 13.213956949654152 0.0 14 1.075398327540521E-4 0.0 0.0 13.478289858563612 0.0 15 1.075398327540521E-4 0.0 0.0 13.8979640558863 0.0 16 1.6130974913107816E-4 0.0 0.0 14.534546095873912 0.0 17 1.6130974913107816E-4 0.0 0.0 15.332868044323618 0.0 18 1.6130974913107816E-4 0.0 0.0 16.184529749819333 0.0 19 1.6130974913107816E-4 0.0 0.0 17.079691317664064 0.0 20 1.6130974913107816E-4 0.0 0.0 17.778807770398156 0.0 21 1.6130974913107816E-4 0.0 0.0 18.7586569565367 0.0 22 1.6130974913107816E-4 0.0 0.0 19.828785832272274 0.0 23 1.6130974913107816E-4 0.0 0.0 20.81589395712172 0.0 24 1.6130974913107816E-4 0.0 0.0 21.589051584706976 0.0 25 1.6130974913107816E-4 0.0 0.0 22.259885061426754 0.0 26 1.6130974913107816E-4 0.0 0.0 22.882379383323585 0.0 27 1.6130974913107816E-4 0.0 0.0 23.56498847172993 0.0 28 1.6130974913107816E-4 0.0 0.0 24.223777487181252 0.0 29 1.6130974913107816E-4 0.0 0.0 24.949026119274578 0.0 30 1.6130974913107816E-4 0.0 0.0 25.734927217041193 0.0 31 1.6130974913107816E-4 0.0 0.0 26.393124763412366 0.0 32 1.6130974913107816E-4 0.0 0.0 27.05320425685674 0.0 33 1.6130974913107816E-4 0.0 0.0 27.72000498984824 0.0 34 1.6130974913107816E-4 0.0 0.0 28.422724026979594 0.0 35 2.150796655081042E-4 0.0 0.0 29.195935424481227 0.0 36 2.150796655081042E-4 0.0 0.0 29.8871476995079 0.0 37 2.150796655081042E-4 0.0 0.0 30.603524295399016 0.0 38 2.150796655081042E-4 0.0 0.0 31.424967307890842 0.0 39 2.150796655081042E-4 0.0 0.0 32.74630923293988 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTAT 1240 0.0 43.91129 1 TCGTTAG 240 0.0 43.124996 1 CGTTATT 1075 0.0 41.860462 1 CGTAAGG 70 0.0 41.785713 2 TTAGGGA 3740 0.0 41.209892 4 CTCGAAT 160 0.0 40.781254 43 CCGATGA 1170 0.0 39.999996 18 TTTACGG 925 0.0 39.89189 2 TTATGGG 4795 0.0 39.885296 3 CGTTTTT 3055 0.0 39.770866 1 TAATACG 380 0.0 39.67105 4 TACGGGA 905 0.0 39.03315 4 CGTTAGG 450 0.0 39.0 2 TTTTACG 600 0.0 39.0 1 ATGGGCG 655 0.0 38.816795 5 TTACGGG 1650 0.0 38.59091 3 CGATGAA 1215 0.0 38.518517 19 TATGGGA 3135 0.0 38.32536 4 TAGGGTA 705 0.0 38.297874 5 TATGGGC 1325 0.0 38.207546 4 >>END_MODULE