FastQCFastQC Report
Sat 14 Jan 2017
SRR2934137.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934137.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences617335
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC45330.7342852746077899No Hit
CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT31750.514307466772498Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC24990.40480452266597555No Hit
GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC21890.3545886755165348No Hit
CCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC16670.2700316683810249No Hit
CTGTCACTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT11730.19001028614933546Illumina Single End Adapter 2 (95% over 21bp)
TCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC10600.17170579993034576No Hit
TCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG9960.16133865729304186No Hit
GCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC9380.1519434342779852No Hit
CCTGACTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC8650.14011841220731047No Hit
CGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG6920.11209472976584836No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGAAT253.8886992E-545.00000421
CGTTGAT351.2107012E-745.00000425
ATAGCCG253.8886992E-545.00000431
GTCTACG253.8886992E-545.0000041
CGTTTAT1150.045.0000041
CTCCCGT207.030747E-445.025
GATCCAC207.030747E-445.09
GAATCGG207.030747E-445.021
CGCGCAA207.030747E-445.016
CGTTACC207.030747E-445.013
GTTCCGA207.030747E-445.015
TCCAATC207.030747E-445.028
TGAATCG406.8066583E-945.031
CACCGGT207.030747E-445.010
CGTCCGA207.030747E-445.040
TCGACGT453.8380676E-1045.026
TAATGCG207.030747E-445.024
CGATAAC406.8066583E-945.016
AATCGAT207.030747E-445.039
TGTCCGA207.030747E-445.026