Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934137.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 617335 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC | 4533 | 0.7342852746077899 | No Hit |
CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT | 3175 | 0.514307466772498 | Illumina Single End Adapter 2 (95% over 21bp) |
TCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC | 2499 | 0.40480452266597555 | No Hit |
GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC | 2189 | 0.3545886755165348 | No Hit |
CCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC | 1667 | 0.2700316683810249 | No Hit |
CTGTCACTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT | 1173 | 0.19001028614933546 | Illumina Single End Adapter 2 (95% over 21bp) |
TCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC | 1060 | 0.17170579993034576 | No Hit |
TCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG | 996 | 0.16133865729304186 | No Hit |
GCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC | 938 | 0.1519434342779852 | No Hit |
CCTGACTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC | 865 | 0.14011841220731047 | No Hit |
CGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG | 692 | 0.11209472976584836 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGAAT | 25 | 3.8886992E-5 | 45.000004 | 21 |
CGTTGAT | 35 | 1.2107012E-7 | 45.000004 | 25 |
ATAGCCG | 25 | 3.8886992E-5 | 45.000004 | 31 |
GTCTACG | 25 | 3.8886992E-5 | 45.000004 | 1 |
CGTTTAT | 115 | 0.0 | 45.000004 | 1 |
CTCCCGT | 20 | 7.030747E-4 | 45.0 | 25 |
GATCCAC | 20 | 7.030747E-4 | 45.0 | 9 |
GAATCGG | 20 | 7.030747E-4 | 45.0 | 21 |
CGCGCAA | 20 | 7.030747E-4 | 45.0 | 16 |
CGTTACC | 20 | 7.030747E-4 | 45.0 | 13 |
GTTCCGA | 20 | 7.030747E-4 | 45.0 | 15 |
TCCAATC | 20 | 7.030747E-4 | 45.0 | 28 |
TGAATCG | 40 | 6.8066583E-9 | 45.0 | 31 |
CACCGGT | 20 | 7.030747E-4 | 45.0 | 10 |
CGTCCGA | 20 | 7.030747E-4 | 45.0 | 40 |
TCGACGT | 45 | 3.8380676E-10 | 45.0 | 26 |
TAATGCG | 20 | 7.030747E-4 | 45.0 | 24 |
CGATAAC | 40 | 6.8066583E-9 | 45.0 | 16 |
AATCGAT | 20 | 7.030747E-4 | 45.0 | 39 |
TGTCCGA | 20 | 7.030747E-4 | 45.0 | 26 |