SRR2934137.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934137.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	617335
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	4533	0.7342852746077899	No Hit
CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT	3175	0.514307466772498	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	2499	0.40480452266597555	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	2189	0.3545886755165348	No Hit
CCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	1667	0.2700316683810249	No Hit
CTGTCACTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT	1173	0.19001028614933546	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	1060	0.17170579993034576	No Hit
TCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG	996	0.16133865729304186	No Hit
GCTGTATCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	938	0.1519434342779852	No Hit
CCTGACTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	865	0.14011841220731047	No Hit
CGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG	692	0.11209472976584836	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGAAT	25	3.8886992E-5	45.000004	21
CGTTGAT	35	1.2107012E-7	45.000004	25
ATAGCCG	25	3.8886992E-5	45.000004	31
GTCTACG	25	3.8886992E-5	45.000004	1
CGTTTAT	115	0.0	45.000004	1
CTCCCGT	20	7.030747E-4	45.0	25
GATCCAC	20	7.030747E-4	45.0	9
GAATCGG	20	7.030747E-4	45.0	21
CGCGCAA	20	7.030747E-4	45.0	16
CGTTACC	20	7.030747E-4	45.0	13
GTTCCGA	20	7.030747E-4	45.0	15
TCCAATC	20	7.030747E-4	45.0	28
TGAATCG	40	6.8066583E-9	45.0	31
CACCGGT	20	7.030747E-4	45.0	10
CGTCCGA	20	7.030747E-4	45.0	40
TCGACGT	45	3.8380676E-10	45.0	26
TAATGCG	20	7.030747E-4	45.0	24
CGATAAC	40	6.8066583E-9	45.0	16
AATCGAT	20	7.030747E-4	45.0	39
TGTCCGA	20	7.030747E-4	45.0	26