Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934132.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 793453 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC | 3702 | 0.46656827814627966 | Illumina PCR Primer Index 5 (95% over 23bp) |
CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT | 2873 | 0.36208823963108083 | Illumina PCR Primer Index 5 (95% over 24bp) |
TCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC | 2125 | 0.267816745289261 | Illumina PCR Primer Index 5 (95% over 23bp) |
GCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC | 1621 | 0.2042969148771257 | Illumina PCR Primer Index 5 (95% over 23bp) |
CCTGTATCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC | 1310 | 0.16510114650773267 | Illumina PCR Primer Index 5 (95% over 23bp) |
CTGTCACTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT | 1075 | 0.1354837652639791 | Illumina PCR Primer Index 5 (95% over 24bp) |
TCTGTATCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC | 844 | 0.10637050965841706 | Illumina PCR Primer Index 5 (95% over 23bp) |
CGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTG | 824 | 0.10384988146745933 | Illumina PCR Primer Index 5 (95% over 22bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCGAA | 20 | 7.0319657E-4 | 45.0 | 45 |
TTTAGCG | 35 | 1.2112832E-7 | 45.0 | 2 |
AAGTACG | 20 | 7.0319657E-4 | 45.0 | 16 |
CGCATTA | 25 | 3.8897095E-5 | 45.0 | 14 |
AACGCCC | 20 | 7.0319657E-4 | 45.0 | 39 |
CGAATGC | 35 | 1.2112832E-7 | 45.0 | 15 |
CGTAAGG | 50 | 2.1827873E-11 | 45.0 | 2 |
GTGCGTT | 20 | 7.0319657E-4 | 45.0 | 21 |
CCGTTAG | 40 | 6.8102963E-9 | 45.0 | 1 |
GCGTAAG | 20 | 7.0319657E-4 | 45.0 | 1 |
TCTATCG | 25 | 3.8897095E-5 | 45.0 | 2 |
CCGTATG | 30 | 2.1646483E-6 | 44.999996 | 1 |
TCTACGG | 200 | 0.0 | 43.875 | 2 |
CGTTTAT | 165 | 0.0 | 43.636364 | 1 |
TGTTACG | 110 | 0.0 | 42.954544 | 1 |
CGTTAGG | 235 | 0.0 | 42.12766 | 2 |
CGAGGGT | 70 | 0.0 | 41.785713 | 4 |
TACGGGC | 245 | 0.0 | 41.32653 | 4 |
TTCACGG | 235 | 0.0 | 41.17021 | 2 |
TAGGCGT | 50 | 1.0804797E-9 | 40.5 | 4 |