FastQCFastQC Report
Sat 14 Jan 2017
SRR2934132.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934132.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences793453
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC37020.46656827814627966Illumina PCR Primer Index 5 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT28730.36208823963108083Illumina PCR Primer Index 5 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC21250.267816745289261Illumina PCR Primer Index 5 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC16210.2042969148771257Illumina PCR Primer Index 5 (95% over 23bp)
CCTGTATCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC13100.16510114650773267Illumina PCR Primer Index 5 (95% over 23bp)
CTGTCACTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT10750.1354837652639791Illumina PCR Primer Index 5 (95% over 24bp)
TCTGTATCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC8440.10637050965841706Illumina PCR Primer Index 5 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTG8240.10384988146745933Illumina PCR Primer Index 5 (95% over 22bp)

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCGAA207.0319657E-445.045
TTTAGCG351.2112832E-745.02
AAGTACG207.0319657E-445.016
CGCATTA253.8897095E-545.014
AACGCCC207.0319657E-445.039
CGAATGC351.2112832E-745.015
CGTAAGG502.1827873E-1145.02
GTGCGTT207.0319657E-445.021
CCGTTAG406.8102963E-945.01
GCGTAAG207.0319657E-445.01
TCTATCG253.8897095E-545.02
CCGTATG302.1646483E-644.9999961
TCTACGG2000.043.8752
CGTTTAT1650.043.6363641
TGTTACG1100.042.9545441
CGTTAGG2350.042.127662
CGAGGGT700.041.7857134
TACGGGC2450.041.326534
TTCACGG2350.041.170212
TAGGCGT501.0804797E-940.54