SRR2934128.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934128.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	839963
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	3690	0.43930506462784674	TruSeq Adapter, Index 22 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGCT	3255	0.3875170692042388	TruSeq Adapter, Index 20 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	2846	0.33882444821974306	TruSeq Adapter, Index 22 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	2255	0.2684642061614619	TruSeq Adapter, Index 22 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGC	1771	0.21084262044875787	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCG	1582	0.18834162933367302	No Hit
CCTGTATCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	1376	0.163816739546861	TruSeq Adapter, Index 20 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTC	1241	0.1477446030360861	No Hit
TCTGTATCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	1209	0.14393491141871725	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCACTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGCT	1101	0.13107720221009736	TruSeq Adapter, Index 20 (95% over 22bp)
TCCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTG	1042	0.12405308329057352	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGGG	20	7.0322E-4	45.000004	3
TCCGCAT	30	2.1648011E-6	45.000004	12
CTTCCCG	20	7.0322E-4	45.000004	1
ACGCAAT	30	2.1648011E-6	45.000004	18
GGCGTAG	45	3.8380676E-10	45.000004	1
GACCGAA	90	0.0	45.000004	17
TTCGTCG	30	2.1648011E-6	45.000004	1
CAATTCG	20	7.0322E-4	45.000004	16
CGTTATC	20	7.0322E-4	45.000004	21
ATCCGGC	45	3.8380676E-10	45.000004	6
ATCCGCA	20	7.0322E-4	45.000004	11
TACGACA	20	7.0322E-4	45.000004	45
ACTACGC	20	7.0322E-4	45.000004	15
TTGCGAG	45	3.8380676E-10	45.000004	1
GCGATAG	20	7.0322E-4	45.000004	9
CGCAATC	30	2.1648011E-6	45.000004	19
GCGTAAA	20	7.0322E-4	45.000004	38
GCCCGCG	35	1.2114106E-7	45.000004	14
CGGTACG	55	1.8189894E-12	45.0	3
TATACGA	25	3.8899052E-5	45.0	43