SRR2934126.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934126.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	387387
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	3099	0.7999752185798699	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	2325	0.6001750187796699	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	1877	0.4845283915051357	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	1512	0.3903073670515531	No Hit
CCTGTATCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	1134	0.29273052528866483	No Hit
CTGTCACTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	871	0.22483975972348064	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTATCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	841	0.2170955659327752	No Hit
TCCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	768	0.19825136104205873	No Hit
GCTGTATCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	670	0.17295366132575435	No Hit
CGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	602	0.1554001554001554	No Hit
CCTGACTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	523	0.13500711175129781	No Hit
CTGTATCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	427	0.11022569162104047	Illumina Single End Adapter 1 (95% over 21bp)
TGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	419	0.10816057327685234	No Hit
TTCCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT	400	0.10325591720940558	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTTACG	30	2.1617616E-6	45.000004	1
GCGTCAT	35	1.2091368E-7	45.000004	37
TGCGTAG	30	2.1617616E-6	45.000004	1
CAGGTTT	20	7.02749E-4	45.0	5
CTTAAGG	25	3.886001E-5	45.0	2
AACCGAG	25	3.886001E-5	45.0	16
CTGTCGT	20	7.02749E-4	45.0	23
TCGTTAG	75	0.0	45.0	1
CGAACGA	25	3.886001E-5	45.0	22
CTGTACG	20	7.02749E-4	45.0	1
GATCGAA	20	7.02749E-4	45.0	13
CGAAAGG	20	7.02749E-4	45.0	16
ATTACGT	20	7.02749E-4	45.0	34
TCTTACG	45	3.8380676E-10	45.0	1
CACGCCA	25	3.886001E-5	45.0	27
CCTACGG	20	7.02749E-4	45.0	2
CGCGAGG	25	3.886001E-5	45.0	2
TAACGAA	25	3.886001E-5	45.0	19
GCGTTAG	20	7.02749E-4	45.0	1
AGAGTAA	45	3.8380676E-10	45.0	41