SRR2934122.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934122.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1966852
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGC	7965	0.4049618374946361	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCG	6493	0.3301214326243154	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTC	6198	0.31512284605044	No Hit
CCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	5910	0.3004801581410294	No Hit
CTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGCT	5131	0.2608737210527279	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	4354	0.22136896929713062	No Hit
TCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	3394	0.1725600095990954	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2863	0.14556255376611968	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGGATCGTT	2390	0.12151397258156689	No Hit
GAATCAGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTC	2311	0.1174974019397494	No Hit
CGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTG	2007	0.10204123136870491	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCC	1987	0.1010243780416625	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAGG	455	0.0	42.032967	2
CGATCGA	60	3.6379788E-12	41.249996	41
TAGGGCG	765	0.0	41.176468	5
TTAGGGA	4475	0.0	40.67598	4
CGTTTAT	845	0.0	40.473373	1
CGTATGG	345	0.0	40.43478	2
TACGGGT	190	0.0	40.263157	4
TACGGGA	1145	0.0	39.694324	4
TTATGGG	4875	0.0	39.55385	3
TAATACG	245	0.0	39.489796	4
AATACGG	245	0.0	39.489796	5
TTACGGG	1770	0.0	39.279663	3
TATGGGA	3430	0.0	39.161808	4
CTAGGGA	2420	0.0	39.14256	4
TATGGGC	1305	0.0	38.96552	4
TAGGGAC	1985	0.0	38.87909	5
TAGGGAG	2595	0.0	38.84393	5
CGTTTTT	2080	0.0	38.72596	1
TTTAGGG	7470	0.0	38.403614	3
ATGGGCG	680	0.0	38.38235	5