SRR2934120.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934120.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	389009
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	1728	0.44420566105154385	No Hit
CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT	1293	0.33238305540488783	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	1005	0.25834877856296384	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	927	0.23829782858494275	No Hit
CCTGTATCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	600	0.15423807675400825	No Hit
CTGTCACTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT	521	0.1339300633147305	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTATCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	403	0.10359657488644221	No Hit
TCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG	393	0.10102594027387542	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGTACG	30	2.1617852E-6	45.000004	7
TACGAAT	50	2.1827873E-11	45.000004	12
CGCAGTA	25	3.8860308E-5	45.000004	37
CCAACCG	25	3.8860308E-5	45.000004	32
CGTCATA	25	3.8860308E-5	45.000004	38
TCGTTAG	40	6.7957444E-9	45.0	1
CTGTACG	20	7.027526E-4	45.0	1
GTCTACG	20	7.027526E-4	45.0	1
ACGGGTA	35	1.209155E-7	45.0	5
CATTAGT	20	7.027526E-4	45.0	38
CGTTAGG	70	0.0	45.0	2
TGTAGCG	20	7.027526E-4	45.0	2
ATTGCGG	20	7.027526E-4	45.0	2
CGTTTGG	145	0.0	43.44828	2
CGTTATT	90	0.0	42.5	1
TTTCACG	85	0.0	42.35294	1
TAGGGAC	355	0.0	41.830986	5
TTATGGG	1160	0.0	41.31466	3
CGTGGGT	60	3.6379788E-12	41.250004	4
GGATGAC	115	0.0	41.086956	8