SRR2934118.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934118.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	460175
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	2814	0.6115064920953985	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGCT	2338	0.5080675829847341	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	1936	0.4207095126853915	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	1573	0.3418264790568805	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTATCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	981	0.21317976856630633	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	954	0.20731243548649972	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	923	0.2005758678763514	No Hit
CTGTCACTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGCT	834	0.18123539957624815	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTATCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	800	0.17384690606834355	Illumina Single End Adapter 1 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTG	672	0.1460314010974086	No Hit
GCTGTATCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	650	0.14125061118052915	Illumina Single End Adapter 1 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	604	0.1312544140815994	No Hit
CGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTG	516	0.11213125441408159	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGCGT	45	3.8380676E-10	45.000004	34
TATCAGC	20	7.028873E-4	45.0	45
TAATACG	35	1.2098099E-7	45.0	4
GATACCG	20	7.028873E-4	45.0	21
TCGTTAA	25	3.887147E-5	45.0	34
GACCGTA	20	7.028873E-4	45.0	42
CTATAAG	25	3.887147E-5	45.0	11
TTACTCG	20	7.028873E-4	45.0	45
GGATAGT	35	1.2098099E-7	45.0	8
TAACGGT	20	7.028873E-4	45.0	40
AGGCGAT	55	1.8189894E-12	45.0	6
GCGTTCA	35	1.2098099E-7	45.0	37
ACGGGTC	25	3.887147E-5	45.0	5
AACGGTT	20	7.028873E-4	45.0	10
CGTTAAG	25	3.887147E-5	45.0	35
CCCGTAA	25	3.887147E-5	45.0	16
CCGTACA	20	7.028873E-4	45.0	44
CCGTAAA	25	3.887147E-5	45.0	17
CTACGAA	25	3.887147E-5	45.0	11
TACGAAT	25	3.887147E-5	45.0	12